SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.
☆20Feb 23, 2025Updated last year
Alternatives and similar repositories for SmallSeqFlow
Users that are interested in SmallSeqFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhysioNexus is a open source tool that transforms complex time series data into intuitive network visualizations showing cause-and-effect…☆16Jun 24, 2025Updated 11 months ago
- Assorted ML tutorials that I originally wrote for Decoding Biology☆13Aug 18, 2024Updated last year
- Predictive Modeling of Gene Expression in Skeletal Muscle Using scRNA-seq☆11Oct 3, 2024Updated last year
- A DIY guide to gene co-expression network analysis☆14Mar 31, 2025Updated last year
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆22Feb 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R Fundamentals for Biologists☆33Jan 25, 2025Updated last year
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆27Aug 11, 2024Updated last year
- Introduction to Bash for bioinformatics☆53Aug 9, 2024Updated last year
- Uncovering Amiloride's Mechanisms of Action in Multiple Myeloma: A Bioinformatics Approach☆27Jan 31, 2025Updated last year
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated last month
- Python Fundamentals for Biologists☆40Nov 15, 2024Updated last year
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Mar 16, 2026Updated 2 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 5 months ago
- ☆10May 17, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A DIY Guide To BLAST Tools For Sequence Alignment☆17Aug 9, 2024Updated last year
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆500Dec 26, 2025Updated 4 months ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 2 months ago
- A DIY Guide To Single-Cell RNA-Sequencing Analysis☆36Apr 8, 2025Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- ☆18Aug 22, 2021Updated 4 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Survival analysis utility functions using functional programming principals☆11Jul 8, 2020Updated 5 years ago
- coding exercise using TCGA immune infiltration data☆46Feb 2, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- Teaching modules for Human Genome Variation Lab.☆21Jun 6, 2025Updated 11 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 2 months ago
- Python bindings for SingleR☆16May 6, 2026Updated 2 weeks ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 5 months ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 5 months ago
- A tool to compare two CSV files of SMILES strings, find overlapping compounds by InChIKey prefix, and generate an HTML visualization of …☆16Apr 20, 2025Updated last year
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 5 months ago
- ☆10Sep 14, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 6 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- CRUK Bioinformatics Workshop September 2017☆18Sep 21, 2017Updated 8 years ago
- ☆15Apr 20, 2023Updated 3 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆23May 9, 2026Updated 2 weeks ago
- ☆18Sep 28, 2015Updated 10 years ago