SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.
☆20Feb 23, 2025Updated last year
Alternatives and similar repositories for SmallSeqFlow
Users that are interested in SmallSeqFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assorted ML tutorials that I originally wrote for Decoding Biology☆14Aug 18, 2024Updated last year
- Exploring mutual features between the 5xFAD, 3xTG-AD, and PS3O1S Alzheimer's Disease Mouse Models☆12Jan 10, 2025Updated last year
- PhysioNexus is a open source tool that transforms complex time series data into intuitive network visualizations showing cause-and-effect…☆17Jun 24, 2025Updated last year
- A DIY Guide To BLAST Tools For Sequence Alignment☆17Aug 9, 2024Updated last year
- A DIY guide to gene co-expression network analysis☆16Mar 31, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R Fundamentals for Biologists☆33Jan 25, 2025Updated last year
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆27Aug 11, 2024Updated last year
- A DIY Guide To Single-Cell RNA-Sequencing Analysis☆35Apr 8, 2025Updated last year
- Introduction to Bash for bioinformatics☆54Aug 9, 2024Updated last year
- Mapping DEGs to PPI Networks, Identifying Network Hubs and Highly Connected Proteins, and Simulating Genetic Circuits. An End-to-End DIY …☆30Jan 13, 2025Updated last year
- Python Fundamentals for Biologists☆42Nov 15, 2024Updated last year
- A DIY Guide to Developing Proteomic Biomarker Panels☆31Feb 24, 2026Updated 5 months ago
- Uncovering Amiloride's Mechanisms of Action in Multiple Myeloma: A Bioinformatics Approach☆27Jan 31, 2025Updated last year
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆509Dec 26, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains math tutorials I created for Bioinformatics and Computational Biology.☆97Aug 26, 2024Updated last year
- A pipeline creation tool using Snakemake☆14Updated this week
- Chromatin ACcessibility and Transcriptomics Unifying Software☆19Oct 25, 2024Updated last year
- ☆10May 17, 2017Updated 9 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 4 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- A tool to create genomic reports based on 23andMe data.☆18Mar 8, 2024Updated 2 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- Compilation of R, Unix, Vi, Git, MD cheatsheets & more!☆13Oct 16, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Computational Biology & Bioinformatics Resources☆16Sep 9, 2025Updated 10 months ago
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- coding exercise using TCGA immune infiltration data☆46Feb 2, 2024Updated 2 years ago
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- ☆15Apr 20, 2023Updated 3 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 7 months ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 3 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 7 months ago
- ☆17May 7, 2026Updated 2 months ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆17Jun 16, 2026Updated last month
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 7 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 7 months ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago