evanpeikon / SmallSeqFlowLinks
SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.
☆14Updated 6 months ago
Alternatives and similar repositories for SmallSeqFlow
Users that are interested in SmallSeqFlow are comparing it to the libraries listed below
Sorting:
- ☆20Updated 3 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Updated 2 weeks ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- Bayesian enrichment estimation in R☆11Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 2 weeks ago
- FunctionaL Omics Processing platform☆13Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated last year
- R tool to analyse and integrate multiple -omics data☆13Updated 3 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆30Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Updated 7 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 6 months ago
- pathway based data integration and visualization☆41Updated 5 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated 10 months ago
- Code for fuzzy monkeys.☆15Updated 4 months ago
- visual analysis of your VCF files☆36Updated 2 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 6 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Network Visualization using both GUI and Programming☆29Updated 3 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆33Updated 2 years ago
- ☆17Updated 3 weeks ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆11Updated last month
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆15Updated last week
- Script and pipeline for BRAINcode project☆17Updated 4 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆25Updated 2 years ago