SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.
☆20Feb 23, 2025Updated last year
Alternatives and similar repositories for SmallSeqFlow
Users that are interested in SmallSeqFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predictive Modeling of Gene Expression in Skeletal Muscle Using scRNA-seq☆11Oct 3, 2024Updated last year
- Assorted ML tutorials that I originally wrote for Decoding Biology☆14Aug 18, 2024Updated 2 years ago
- Exploring mutual features between the 5xFAD, 3xTG-AD, and PS3O1S Alzheimer's Disease Mouse Models☆12Jan 10, 2025Updated last year
- PhysioNexus is a open source tool that transforms complex time series data into intuitive network visualizations showing cause-and-effect…☆18Jun 24, 2025Updated last year
- A DIY guide to gene co-expression network analysis☆16Mar 31, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R Fundamentals for Biologists☆33Jan 25, 2025Updated last year
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆28Aug 11, 2024Updated 2 years ago
- A DIY Guide To Single-Cell RNA-Sequencing Analysis☆35Apr 8, 2025Updated last year
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆22Feb 10, 2025Updated last year
- Introduction to Bash for bioinformatics☆55Aug 9, 2024Updated 2 years ago
- Mapping DEGs to PPI Networks, Identifying Network Hubs and Highly Connected Proteins, and Simulating Genetic Circuits. An End-to-End DIY …☆30Jan 13, 2025Updated last year
- Python Fundamentals for Biologists☆45Nov 15, 2024Updated last year
- A DIY Guide to Developing Proteomic Biomarker Panels☆31Feb 24, 2026Updated 6 months ago
- Uncovering Amiloride's Mechanisms of Action in Multiple Myeloma: A Bioinformatics Approach☆27Jan 31, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆525Dec 26, 2025Updated 8 months ago
- This repository contains math tutorials I created for Bioinformatics and Computational Biology.☆97Aug 26, 2024Updated 2 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- ☆10May 17, 2017Updated 9 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 6 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- ☆18Aug 22, 2021Updated 5 years ago
- Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆16Aug 13, 2025Updated last year
- Compilation of R, Unix, Vi, Git, MD cheatsheets & more!☆13Oct 16, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Computational Biology & Bioinformatics Resources☆16Sep 9, 2025Updated last year
- Survival analysis utility functions using functional programming principals☆11Jul 8, 2020Updated 6 years ago
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- coding exercise using TCGA immune infiltration data☆46Feb 2, 2024Updated 2 years ago
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆16Jul 15, 2026Updated 2 months ago
- ☆15Apr 20, 2023Updated 3 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 9 months ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Sep 14, 2023Updated 3 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 9 months ago
- ☆22May 7, 2026Updated 4 months ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆19Updated this week
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 9 months ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago