evanpeikon / SmallSeqFlowLinks
SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.
☆14Updated 7 months ago
Alternatives and similar repositories for SmallSeqFlow
Users that are interested in SmallSeqFlow are comparing it to the libraries listed below
Sorting:
- ☆20Updated 4 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Updated 2 weeks ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆33Updated 8 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 7 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last month
- Code for fuzzy monkeys.☆15Updated 4 months ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 5 months ago
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆26Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated 11 months ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- ☆27Updated 2 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 8 months ago
- ☆18Updated 5 months ago
- FunctionaL Omics Processing platform☆13Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- ☆36Updated 7 months ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 11 months ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- Omics data analysis☆15Updated 6 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- ☆12Updated 5 years ago
- Short course describing the considerations for a successful RNA-seq experiment☆18Updated 3 years ago