A k-mer search engine for all Sequence Read Archive public accessions
☆38Oct 29, 2024Updated last year
Alternatives and similar repositories for LoganSearch
Users that are interested in LoganSearch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- modular k-mer count matrix and Bloom filter construction for large read collections☆87Mar 24, 2026Updated 2 weeks ago
- Methods to determine sequence element (unitig) presence/absence☆23Mar 6, 2026Updated last month
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- Compacted and colored de Bruijn graph construction and querying☆95Mar 6, 2026Updated last month
- ☆10Jun 9, 2025Updated 10 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- Fast sequence distance estimates☆28Mar 10, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 months ago
- Logan Unitigs and Contigs☆186Apr 1, 2026Updated last week
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- ☆17Oct 7, 2024Updated last year
- Plasmid analysis using rearrangement distances☆50Mar 23, 2026Updated 2 weeks ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- 1-code framework: docs, C-library, and tools☆25Apr 2, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Mar 12, 2026Updated last month
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- Implementation of a Backpack Quotient Filter☆13Updated this week
- compacted de Bruijn graph construction in low memory☆100Nov 4, 2025Updated 5 months ago
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 2 months ago
- ☆23Sep 9, 2025Updated 7 months ago
- ☆19Nov 21, 2024Updated last year
- Building the compacted de Bruijn graph efficiently from references or reads.☆91Feb 26, 2026Updated last month
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago