IndexThePlanet / LoganSearchLinks
A k-mer search engine for all Sequence Read Archive public accessions
☆32Updated 11 months ago
Alternatives and similar repositories for LoganSearch
Users that are interested in LoganSearch are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- ☆45Updated 2 months ago
- ☆44Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆16Updated 3 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆54Updated this week
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 11 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Pan-Genomic Matching Statistics☆53Updated last year
- Differential k-mer analysis☆37Updated last year
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- ☆32Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated last year
- ☆14Updated 2 years ago
- PGR-TK: Pangenome Research Tool Kit☆19Updated 6 months ago
- Highly sensitive pathogen detection☆11Updated 5 years ago