IndexThePlanet / LoganSearchLinks
A k-mer search engine for all Sequence Read Archive public accessions
☆29Updated 7 months ago
Alternatives and similar repositories for LoganSearch
Users that are interested in LoganSearch are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated 2 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆41Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 7 months ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- ☆17Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Variant call verification☆16Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- Differential k-mer analysis☆36Updated last year
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- Genome size estimation from long read overlaps☆56Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- ☆14Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆32Updated 2 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago