Explore and download data from the recount3 project
☆38Sep 24, 2025Updated 5 months ago
Alternatives and similar repositories for recount3
Users that are interested in recount3 are comparing it to the libraries listed below
Sorting:
- examples to run monorail externally☆19Nov 14, 2024Updated last year
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 5 months ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆20Feb 19, 2022Updated 4 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Jul 15, 2022Updated 3 years ago
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Jul 14, 2025Updated 7 months ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Elucidate and visualise a compound's mechanism of action by combining structure-based target prediction with gene expression-based causal…☆13Feb 11, 2023Updated 3 years ago
- ☆12Feb 12, 2024Updated 2 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Feb 4, 2026Updated last month
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Feb 10, 2026Updated 3 weeks ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- ☆12Sep 30, 2025Updated 5 months ago
- ☆14Dec 21, 2022Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆57Jul 14, 2025Updated 7 months ago
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 11 months ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- DNA copy number detection from off-target sequence data☆33May 17, 2018Updated 7 years ago
- Use cases for anndata.☆14Jun 11, 2025Updated 8 months ago
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 2 months ago
- ☆13May 13, 2024Updated last year
- A stitching platform for InXight☆15Mar 28, 2025Updated 11 months ago
- Identify cell types and pathways affected by genetic risk loci.☆36Feb 29, 2024Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 6 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 6 months ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Jun 4, 2019Updated 6 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 3 years ago
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆20Feb 18, 2026Updated 2 weeks ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 10 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Dec 12, 2024Updated last year
- Brain Cell Type Specific Gene Expression Analysis☆17Dec 27, 2023Updated 2 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago