gpp-rnd / stringdbLinks
☆10Updated last year
Alternatives and similar repositories for stringdb
Users that are interested in stringdb are comparing it to the libraries listed below
Sorting:
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆19Updated 7 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated last month
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆33Updated last year
- Python client for the Open Targets REST API at targetvalidation.org☆25Updated 4 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 5 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- Functional Embedding of Gene Signatures☆45Updated last year
- A Python package for gene network analysis☆32Updated 3 years ago
- Collection of papers related to BCR repertoire analyses☆19Updated 3 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆40Updated 4 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ☆27Updated 3 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- ☆62Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last month
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- ☆11Updated 5 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago