Alternatives and similar repositories for stringdb

Users that are interested in stringdb are comparing it to the libraries listed below

• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 3 years ago
• kckishan / GNE
  This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…
  ☆33Updated 5 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 4 years ago
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated 2 weeks ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• broadinstitute / g2papi
  Python Client Library for the G2P Portal API
  ☆15Updated 4 months ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆46Updated 3 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated 10 months ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• opentargets-archive / opentargets-py
  Python client for the Open Targets REST API at targetvalidation.org
  ☆25Updated 4 months ago
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆22Updated 2 weeks ago
• siheming / mspypeline
  Package to analyze Mass Spec Data
  ☆12Updated 2 years ago
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 5 years ago
• saramasarone / enrich_omics
  A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
  ☆20Updated last year
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated 2 weeks ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆36Updated last year
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆33Updated 8 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆18Updated 3 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated this week
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• jessegmeyerlab / proteomics-tutorial
  ☆67Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago