gpp-rnd / stringdbLinks
☆11Updated last year
Alternatives and similar repositories for stringdb
Users that are interested in stringdb are comparing it to the libraries listed below
Sorting:
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated 2 weeks ago
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆19Updated 11 months ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last week
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆28Updated 8 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆35Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- code for Gogleva et al manuscript☆46Updated 2 years ago
- Library of Integrated Cellular Signatures L1000☆31Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 7 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆30Updated 3 years ago
- Python Client Library for the G2P Portal API☆13Updated 2 months ago
- Functional Embedding of Gene Signatures☆46Updated last year
- ☆27Updated 6 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated 2 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆15Updated 3 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- ☆23Updated 2 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- MHC Class I and Class II neoantigen binding prediction