langmead-lab / monorail-externalLinks
examples to run monorail externally
☆16Updated 7 months ago
Alternatives and similar repositories for monorail-external
Users that are interested in monorail-external are comparing it to the libraries listed below
Sorting:
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- A python package for showing JBrowse views☆25Updated last year
- Diverse sampling for single-cell datasets☆16Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- BAGEL software☆27Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- ☆39Updated 9 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- FRASER - Find RAre Splicing Events in RNA-seq☆46Updated 3 weeks ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆19Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆18Updated last year
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆14Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- Explore and download data from the recount3 project☆35Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago