langmead-lab / monorail-externalLinks
examples to run monorail externally
☆17Updated 10 months ago
Alternatives and similar repositories for monorail-external
Users that are interested in monorail-external are comparing it to the libraries listed below
Sorting:
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Explore and download data from the recount3 project☆36Updated 4 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- A RepSeq processing swiss-knife☆41Updated last year
- Diverse sampling for single-cell datasets☆16Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆39Updated 2 months ago
- Core functionality of the CGAT code☆33Updated 3 weeks ago
- Network Visualization using both GUI and Programming☆29Updated 3 months ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Updated 3 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 8 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- ☆18Updated 4 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- ☆21Updated 8 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 8 months ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago