langmead-lab / monorail-external
examples to run monorail externally
☆15Updated 2 months ago
Alternatives and similar repositories for monorail-external:
Users that are interested in monorail-external are comparing it to the libraries listed below
- Explore and download data from the recount3 project☆31Updated last month
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- ☆33Updated 4 months ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- ☆42Updated 2 months ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- gkmSVM R package☆17Updated 7 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Refining the impact of genetic evidence on clinical success☆23Updated 6 months ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated last week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 9 months ago
- ☆27Updated this week
- Modelling DNA methylation profiles☆22Updated 4 years ago
- High-definition modeling of chromatin + transcriptomics data☆20Updated 2 months ago
- A python package for showing JBrowse views☆23Updated last year
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- BAGEL software☆27Updated 11 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Fit generalized linear models in python.☆27Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆41Updated 4 months ago
- Diverse sampling for single-cell datasets☆15Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆27Updated 3 months ago