A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
☆16Jun 17, 2020Updated 6 years ago
Alternatives and similar repositories for CirComPara
Users that are interested in CirComPara are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tools to find circRNAs in RNA-seq data☆48Nov 16, 2017Updated 8 years ago
- a tool for identifying circular RNAs using RNA-Seq data☆11Aug 10, 2015Updated 11 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆54Mar 21, 2026Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Aug 14, 2018Updated 8 years ago
- ☆11Aug 6, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 10 years ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆14Sep 3, 2019Updated 7 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A tool for evaluating RNA seq mapping☆22Jul 12, 2019Updated 7 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated 2 weeks ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 4 years ago
- snakemake-based workflows☆12Jul 20, 2022Updated 4 years ago
- circular RNA analysis toolset☆90Sep 8, 2024Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 6 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 4 months ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆54Oct 16, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Jan 17, 2019Updated 7 years ago
- Take product quotation from the buyers in one place with Product Quotation For WooCommerce☆11May 23, 2026Updated 3 months ago
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆47Sep 20, 2022Updated 3 years ago
- R htmlwidget package for ideogram.js☆15Oct 26, 2022Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Explore and download data from the recount3 project☆40Apr 1, 2026Updated 5 months ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Jupyter notebook for downloading Stable Diffusion models (e.g. checkpoints, VAEs, LoRAs, etc)☆17Aug 12, 2023Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- 2022-10-27 R-Ladies St. Louis Presentation☆10Oct 28, 2022Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago