egaffo / CirComParaLinks
A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
☆16Updated 5 years ago
Alternatives and similar repositories for CirComPara
Users that are interested in CirComPara are comparing it to the libraries listed below
Sorting:
- ☆18Updated 6 years ago
- DriverPower☆26Updated 6 months ago
- HOT regions paper☆11Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Utility functions for FACETS☆38Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated 10 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- ☆17Updated last year
- R package wrapping bedtools☆41Updated 4 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆38Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆13Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago