egaffo / CirComPara
A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
☆15Updated 4 years ago
Alternatives and similar repositories for CirComPara:
Users that are interested in CirComPara are comparing it to the libraries listed below
- RNA-seq workflow: differential transcript usage☆21Updated last year
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- HOT regions paper☆11Updated 5 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 5 years ago
- R package wrapping bedtools☆40Updated last month
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Filter and prioritize fusion calls☆20Updated 7 months ago
- ☆18Updated 6 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- ☆23Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Updated 8 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ☆10Updated 6 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago