DongqingSun96 / TISCH
Tumor Immune Single-cell Hub
☆21Updated 4 years ago
Alternatives and similar repositories for TISCH:
Users that are interested in TISCH are comparing it to the libraries listed below
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆41Updated 3 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last week
- scWGCNA☆59Updated 2 years ago
- ☆47Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- ☆62Updated 9 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- ☆21Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆29Updated 4 years ago
- SCDC☆45Updated last year
- ☆30Updated 2 years ago
- ☆54Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆32Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year