gagneurlab / FRASER-old-gagneurlab
☆13Updated 10 months ago
Alternatives and similar repositories for FRASER-old-gagneurlab:
Users that are interested in FRASER-old-gagneurlab are comparing it to the libraries listed below
- Benchmarking long-read RNA-seq analysis tools☆26Updated 3 weeks ago
- ☆23Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- Long read to rMATS☆31Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆33Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- IDR☆31Updated last year
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- ☆15Updated 2 years ago
- ☆28Updated 3 months ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ☆21Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- SingleCell Nanopore sequencing data analysis☆56Updated 2 months ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- ☆33Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆11Updated 6 years ago