gagneurlab / FRASER-old-gagneurlab
☆13Updated 9 months ago
Alternatives and similar repositories for FRASER-old-gagneurlab:
Users that are interested in FRASER-old-gagneurlab are comparing it to the libraries listed below
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 9 months ago
- ☆23Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- ☆33Updated 5 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- RNAseq pipeline based on snakemake☆25Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated 11 months ago
- Repository for the Anczukow-Lab splicing pipeline☆14Updated 4 months ago
- Comprehensive and scalable differential splicing analyses☆14Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆33Updated 3 years ago
- ☆25Updated last week
- ☆21Updated 8 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Master of Pores 2☆23Updated 2 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 6 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month