gagneurlab / FRASER-old-gagneurlabLinks
☆13Updated last year
Alternatives and similar repositories for FRASER-old-gagneurlab
Users that are interested in FRASER-old-gagneurlab are comparing it to the libraries listed below
Sorting:
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- IDR☆31Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- chia pet analysis software☆25Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 3 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- A continually expanding collection of RNA-seq tools☆51Updated 10 months ago
- ☆20Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year