Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes
☆25Feb 4, 2026Updated 7 months ago
Alternatives and similar repositories for ELMER
Users that are interested in ELMER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 10 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- This R package contains codes that setup SEER and A-bomb survivor data use with R.☆14Jul 8, 2026Updated 2 months ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆84Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/☆38Aug 2, 2021Updated 5 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- ☆23Sep 23, 2022Updated 4 years ago
- ☆21Feb 17, 2021Updated 5 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data☆15Jul 2, 2020Updated 6 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆36Jul 21, 2026Updated 2 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 3 weeks ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆26Mar 7, 2020Updated 6 years ago
- ☆28Sep 20, 2023Updated 3 years ago
- ☆22Dec 17, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 4 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Comparison, benchmarking & QC of epigenetic datasets☆19May 11, 2026Updated 4 months ago
- Detection of super-enhancers in cancer data☆22Apr 10, 2023Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- ☆21Jul 14, 2022Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆139Sep 6, 2024Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46May 1, 2026Updated 4 months ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- node security project npm utilities☆11Sep 15, 2017Updated 9 years ago
- Explore and download data from the recount3 project☆41Apr 1, 2026Updated 5 months ago
- ☆14Apr 22, 2021Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Google Universial Analytics Measurement Protocol Implementation for Java☆11May 29, 2013Updated 13 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- Postgres plays with PGbouncer and Repmgr for replication/auto-failover☆10Aug 23, 2016Updated 10 years ago