tiagochst / ELMERLinks
Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes
☆25Updated 2 years ago
Alternatives and similar repositories for ELMER
Users that are interested in ELMER are comparing it to the libraries listed below
Sorting:
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆78Updated 4 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- ☆62Updated 4 months ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆89Updated 4 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Reactome Pathway Analysis☆43Updated 3 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- ☆40Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆32Updated last month
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 8 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- workshop website on readthedocs☆19Updated last month
- A General Framework for Consensus Partitioning☆63Updated 6 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 3 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- R package containing useful functions for mutational signature analysis☆83Updated last week
- Transcript quantification import with automatic metadata detection☆68Updated last month
- GLASS consortium☆39Updated 5 years ago