Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes
☆25Feb 4, 2026Updated 5 months ago
Alternatives and similar repositories for ELMER
Users that are interested in ELMER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 10 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- This R package contains codes that setup SEER and A-bomb survivor data use with R.☆14Apr 6, 2026Updated 3 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/☆38Aug 2, 2021Updated 4 years ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆82Jun 28, 2026Updated last week
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- ☆20Feb 17, 2021Updated 5 years ago
- ☆23Sep 23, 2022Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆36Dec 9, 2025Updated 7 months ago
- Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data☆15Jul 2, 2020Updated 6 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- ☆22Dec 17, 2020Updated 5 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 2 months ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- ☆21Jul 14, 2022Updated 3 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45May 1, 2026Updated 2 months ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Comparison, benchmarking & QC of epigenetic datasets☆19May 11, 2026Updated last month
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- R package for WebGestalt☆38Jun 11, 2026Updated 3 weeks ago
- Google Universial Analytics Measurement Protocol Implementation for Java☆11May 29, 2013Updated 13 years ago
- Information about the Node.js IRC community☆14Jul 22, 2016Updated 9 years ago
- Android app for the Docker Remote API☆10Feb 22, 2016Updated 10 years ago
- Client to access ExperimentHub resources☆11Jun 15, 2026Updated 3 weeks ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago