andymckenzie / BRETIGEA
Brain Cell Type Specific Gene Expression Analysis
☆15Updated last year
Alternatives and similar repositories for BRETIGEA:
Users that are interested in BRETIGEA are comparing it to the libraries listed below
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆19Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆55Updated 3 months ago
- Human cortical cell types☆24Updated 5 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆15Updated 10 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆35Updated 2 weeks ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆22Updated 2 years ago
- This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.☆22Updated last year
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆24Updated 4 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- corrplot of LDSC genetic correlation results☆48Updated 2 years ago
- R package for testing and visualizing gene list overlaps☆18Updated 8 years ago
- ☆23Updated last year
- An r package that works as a wrapper to homologene☆42Updated last year
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆15Updated 4 months ago
- ☆28Updated 2 years ago
- ☆49Updated 6 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆33Updated 2 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Co-expression network management based on WGCNA + k-means☆18Updated 3 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated 10 months ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 5 months ago
- tests for statistical significance of clustering☆37Updated 6 years ago
- ☆46Updated 9 months ago
- ☆32Updated last year
- A new extended cell deconvolution for peripheral blood☆16Updated last year