andymckenzie / BRETIGEALinks
Brain Cell Type Specific Gene Expression Analysis
☆17Updated 2 years ago
Alternatives and similar repositories for BRETIGEA
Users that are interested in BRETIGEA are comparing it to the libraries listed below
Sorting:
- Human cortical cell types☆25Updated 6 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Updated 4 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆18Updated 3 years ago
- An R package to manipulate and explore UK Biobank data☆108Updated 2 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆155Updated 2 months ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆47Updated last month
- tests for statistical significance of clustering☆38Updated 7 years ago
- Cytograph version used for adult human-brain analysis☆91Updated 6 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 4 months ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated last month
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆119Updated 4 months ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆139Updated 6 months ago
- ☆71Updated 7 months ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆33Updated 2 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 3 months ago
- Multivariate Omnibus Statistical Test☆22Updated last year
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 3 years ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆20Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 5 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 7 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆14Updated last year
- Nested cross-validation with feature selection filters☆14Updated 3 months ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆58Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- ☆48Updated 7 years ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago