Alternatives and similar repositories for BRETIGEA

Users that are interested in BRETIGEA are comparing it to the libraries listed below

• dhglab / Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD
  Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".
  ☆13Updated 2 years ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆20Updated 3 years ago
• oganm / allenBrain
  Acquiring images from allen brain atlas, mouse ISH experiments in R.
  ☆16Updated last year
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆57Updated 3 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• drighelli / SpatialExperiment
  ☆62Updated this week
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆36Updated last month
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆18Updated last week
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆46Updated last year
• msraredon / Connectome
  ☆28Updated 3 years ago
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆15Updated last year
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆17Updated 7 months ago
• Elisseeff-Lab / domino
  A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…
  ☆17Updated 5 months ago
• theislab / Covid_meta_analysis
  Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…
  ☆24Updated 4 years ago
• linnarsson-lab / developing-human-brain
  ☆32Updated 9 months ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• maggiecrow / MetaNeighbor
  ☆50Updated 7 years ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 7 years ago
• RRHO2 / RRHO2
  ☆18Updated 3 years ago
• LieberInstitute / 10xPilot_snRNAseq-human
  10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
  ☆22Updated 2 years ago
• AllenInstitute / tasic2018analysis
  Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
  ☆24Updated 6 years ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆17Updated last year
• Phillip-a-richmond / PrecisionHealthVirtualEnvironment
  This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.
  ☆22Updated 2 years ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆26Updated last week
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated last week
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆84Updated 2 months ago
• WonLab-CS / Vesalius
  Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
  ☆20Updated last month