skovaka / stringtie2Links
Transcript assembly and quantification for RNA-Seq
☆12Updated 6 years ago
Alternatives and similar repositories for stringtie2
Users that are interested in stringtie2 are comparing it to the libraries listed below
Sorting:
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Hi-C data processing pipeline☆37Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- new repo☆28Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 6 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated 2 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Pore-C support☆53Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 2 weeks ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- ☆33Updated 2 years ago
- ☆36Updated 2 years ago
- tutorial on pggb☆35Updated 7 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆64Updated this week