skovaka / stringtie2Links
Transcript assembly and quantification for RNA-Seq
☆12Updated 6 years ago
Alternatives and similar repositories for stringtie2
Users that are interested in stringtie2 are comparing it to the libraries listed below
Sorting:
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆55Updated 4 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆19Updated 7 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- R package to detect splicing QTLs (sQTLs)☆13Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated 2 months ago
- new repo☆28Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 weeks ago
- Hi-C data processing pipeline☆38Updated last year
- ☆38Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 11 months ago
- The Flexible Demultiplexer☆39Updated last month
- for visual evaluation of read support for structural variation☆56Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆24Updated 3 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 4 months ago
- VEP Plugin to annotate high-impact five prime UTR variants☆28Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- ☆38Updated 2 years ago