skovaka / stringtie2
Transcript assembly and quantification for RNA-Seq
☆10Updated 5 years ago
Alternatives and similar repositories for stringtie2:
Users that are interested in stringtie2 are comparing it to the libraries listed below
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆18Updated 9 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆16Updated 6 years ago
- ☆20Updated 2 years ago
- ☆16Updated 2 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆24Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆45Updated last year
- new repo☆27Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Long read to rMATS☆31Updated last year
- New version of JACUSA -> 2.0☆23Updated this week
- A simple script to create a customizable html file from an AnnotSV output.☆18Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆29Updated 2 years ago
- tutorial on pggb☆28Updated this week
- ☆53Updated 3 years ago
- lncRNA-screen☆26Updated 7 years ago
- ☆33Updated last year
- ☆35Updated 5 years ago
- ☆11Updated 2 months ago