skovaka / stringtie2Links
Transcript assembly and quantification for RNA-Seq
☆12Updated 6 years ago
Alternatives and similar repositories for stringtie2
Users that are interested in stringtie2 are comparing it to the libraries listed below
Sorting:
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆19Updated 7 years ago
- Hi-C data processing pipeline☆38Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- new repo☆28Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆38Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- ☆38Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 10 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- ☆60Updated 5 months ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- ☆14Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆58Updated 9 months ago
- SV detection tool for nanopore sequence reads☆97Updated 8 months ago
- A software for calculating telomere length☆72Updated 7 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated last month
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 3 weeks ago