Alternatives and similar repositories for scPML

Users that are interested in scPML are comparing it to the libraries listed below

• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆19Updated 3 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆19Updated last year
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆22Updated 5 months ago
• jcolinge / BulkSignalR
  BulkSignalR
  ☆24Updated 3 months ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• DavisLaboratory / scDECAF
  Querying cellular states and programs by learning representations of gene sets
  ☆14Updated last week
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 2 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• Philyzh8 / scMGCA
  "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…
  ☆14Updated 2 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 8 months ago
• biosurf / cyCombine
  Robust Integration of Single-Cell Cytometry Datasets
  ☆29Updated 2 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆26Updated 3 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• datapplab / AutoClass
  ☆44Updated 3 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆22Updated 2 years ago
• soumelis-lab / ICELLNET
  ☆20Updated 4 months ago
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• KellisLab / scdemon
  single-cell decorrelated module networks
  ☆28Updated last year
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated 3 weeks ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 4 months ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last year
• madhavmantri / chicken_heart
  Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis
  ☆13Updated 2 years ago