single-cell graph autoencoder
☆25Oct 14, 2021Updated 4 years ago
Alternatives and similar repositories for scGAE
Users that are interested in scGAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022☆26Feb 5, 2023Updated 3 years ago
- single-cell graph attentional clustering☆13Feb 10, 2022Updated 4 years ago
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆30Jul 20, 2020Updated 5 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- ☆24Nov 6, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆155Jul 25, 2024Updated last year
- scDCC: Single Cell Deep Constrained Clustering☆45Jul 10, 2024Updated last year
- [BIB 2023] scDFC: A deep fusion clustering method for single-cell RNA-seq data☆10Nov 27, 2025Updated 5 months ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- ☆14Aug 13, 2023Updated 2 years ago
- Data and analysis for the Splatter paper☆31Dec 4, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Jun 17, 2024Updated last year
- EDGE☆15Aug 30, 2020Updated 5 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆34Jul 10, 2024Updated last year
- ☆14Dec 24, 2021Updated 4 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 3 years ago
- Deep count autoencoder for denoising scRNA-seq data☆271Mar 21, 2024Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- ☆13Feb 24, 2025Updated last year
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆22Aug 20, 2024Updated last year
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- 一种基于色彩聚类的图像分割方法☆20Dec 23, 2014Updated 11 years ago
- The code of TAI'24 paper GLAC-GCN☆10Jun 11, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 10 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- ☆16Aug 8, 2023Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- GENOT: Generative Neural Optimal Transport☆16Dec 18, 2024Updated last year
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆13Nov 5, 2024Updated last year
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- SGQuant: Squeezing the Last Bit on Graph Neural Networks with Specialized Quantization☆11Aug 12, 2020Updated 5 years ago
- An implementation of "Supervised Learning with Quantum-Inspired Tensor Networks" using TensorFlow☆11May 13, 2018Updated 8 years ago
- Source code from the article "Modularity-Aware Graph Autoencoders for Joint Community Detection and Link Prediction" (Neural Networks, 20…☆16Dec 6, 2022Updated 3 years ago