ZixiangLuo1161 / scGAEView external linksLinks
single-cell graph autoencoder
☆25Oct 14, 2021Updated 4 years ago
Alternatives and similar repositories for scGAE
Users that are interested in scGAE are comparing it to the libraries listed below
Sorting:
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- single-cell graph attentional clustering☆13Feb 10, 2022Updated 4 years ago
- "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022☆25Feb 5, 2023Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆29Jul 20, 2020Updated 5 years ago
- ☆24Nov 6, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆155Jul 25, 2024Updated last year
- EDGE☆15Aug 30, 2020Updated 5 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- ☆14Aug 13, 2023Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆17Jan 5, 2021Updated 5 years ago
- scDeepCluster for Single Cell RNA-seq data☆105Jul 10, 2024Updated last year
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 3 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- ☆21Jun 17, 2024Updated last year
- The source code of "Equivariant Spatio-Temporal Attentive Graph Networks to Simulate Physical Dynamics"☆27Aug 6, 2024Updated last year
- Code related to scRNA analysis using the scAmpi workflow☆27Jan 21, 2026Updated 3 weeks ago
- ☆22Aug 20, 2024Updated last year
- ☆48Jun 21, 2019Updated 6 years ago
- Data and analysis for the Splatter paper☆29Dec 4, 2017Updated 8 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 4 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- The code of TAI'24 paper GLAC-GCN☆10Jun 11, 2024Updated last year
- Deep count autoencoder for denoising scRNA-seq data☆268Mar 21, 2024Updated last year
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆31May 12, 2020Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- ☆23Dec 5, 2025Updated 2 months ago
- GENOT: Generative Neural Optimal Transport☆14Dec 18, 2024Updated last year
- Public release of Monoqlo Python code☆10Apr 19, 2022Updated 3 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated last year
- Code and data repository associated with the respiratory resistance sensitivity discrimination manuscript.☆10Nov 20, 2025Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41May 29, 2024Updated last year
- CO-Optimal Transport☆42Nov 6, 2020Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago