ZixiangLuo1161 / scGAELinks
single-cell graph autoencoder
☆23Updated 3 years ago
Alternatives and similar repositories for scGAE
Users that are interested in scGAE are comparing it to the libraries listed below
Sorting:
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- ☆21Updated 3 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆19Updated last year
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆24Updated 4 years ago
- scDCC: Single Cell Deep Constrained Clustering☆40Updated last year
- ☆18Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆146Updated 11 months ago
- ☆33Updated 2 years ago
- scDeepCluster for Single Cell RNA-seq data☆102Updated last year
- ☆82Updated 2 years ago
- ☆14Updated 4 years ago
- single-cell graph attentional clustering☆12Updated 3 years ago
- ☆76Updated 3 years ago
- Hypergraph Factorisation☆24Updated 7 months ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆33Updated 2 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆16Updated 4 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 4 months ago
- Single cell joint embedding and modality prediction with autoencoder☆9Updated 2 years ago
- ☆29Updated 2 years ago
- ☆17Updated 3 years ago
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- ☆38Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆63Updated 2 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆33Updated last year
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics).☆11Updated last year
- Prediction of mRNA subcellular localization using deep recurrent neural networks☆15Updated 5 years ago