Alternatives and similar repositories for JAMIE

Users that are interested in JAMIE are comparing it to the libraries listed below

• daifengwanglab / JAMIE
  Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)
  ☆28Updated 2 weeks ago
• xinglab-ai / genomap
  Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
  ☆19Updated last year
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆34Updated last year
• BorgwardtLab / HOGImine
  Higher-order genetic interaction discovery with network-based biological priors.
  ☆13Updated last year
• Philyzh8 / scMGCA
  "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…
  ☆14Updated 2 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 7 months ago
• rs239 / schema
  Framework for integrating heterogeneous modalities of data
  ☆17Updated 3 years ago
• gersteinlab / DeepVelo
  ☆14Updated 3 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• ciortanmadalina / graph-sc
  ☆18Updated 3 years ago
• njwfish / DistributionEmbeddings
  ☆30Updated 2 months ago
• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆35Updated 4 months ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• AdaptInfer / Contextualized
  An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
  ☆75Updated last week
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆69Updated last year
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆20Updated 2 years ago
• jsxlei / scCLIP
  ☆30Updated last year
• Genentech / dcdfg
  ☆26Updated 2 years ago
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆86Updated 3 years ago
• Genentech / PerturbQA
  ☆23Updated 6 months ago
• Kevis9 / scPML
  ☆12Updated last year
• tjiagoM / gtex-transcriptome-modelling
  Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
  ☆11Updated 4 years ago
• Teichlab / celcomen
  ☆16Updated last month
• hybrid-kg / clep
  🤖 A Python Package for generating new patient representations driven by data and prior knowledge
  ☆23Updated 2 months ago
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• ttgump / spaVAE
  Dependency-aware deep generative models for multitasking analysis of spatial genomics data
  ☆36Updated last year
• aristoteleo / dynast-release
  Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
  ☆18Updated last month
• PierreLambert3 / SQuaD-MDS-and-FItSNE-hybrid
  ☆15Updated 2 years ago
• yuzhenmao / ScRAT
  Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).
  ☆12Updated last year
• valence-labs / Tx-Evaluation
  Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks
  ☆10Updated 10 months ago