Jwindler / Assembly_toolsLinks
A collection of tools for Genome Assembly analysis
☆20Updated last year
Alternatives and similar repositories for Assembly_tools
Users that are interested in Assembly_tools are comparing it to the libraries listed below
Sorting:
- Genome annotation pipeline☆60Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆58Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆25Updated last year
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆50Updated last month
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆37Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- A novel genome assembly pipeline based on deep learning☆64Updated 8 months ago
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated 8 months ago
- Genome haplotype assembly and assessment method☆12Updated last year
- ☆37Updated last month
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆22Updated 4 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆40Updated last week
- ☆42Updated last year
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- 一些关于基因组及转录组的知识☆33Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last week
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated last week
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆11Updated 3 weeks ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆18Updated 4 months ago
- a Semi-automated pipeline for assembling T2T genome☆20Updated this week