A collection of tools for Genome Assembly analysis
☆24May 29, 2024Updated 2 years ago
Alternatives and similar repositories for Assembly_tools
Users that are interested in Assembly_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆22Sep 10, 2026Updated last week
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 10 months ago
- ☆12Jun 12, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Jun 7, 2024Updated 2 years ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Graph-based Sequence Assembly Toolkit☆24Sep 11, 2026Updated last week
- ☆18Jul 15, 2021Updated 5 years ago
- ☆10Jan 27, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated 2 months ago
- Organellar genome assembly☆32Sep 12, 2026Updated last week
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- ☆30Oct 20, 2023Updated 2 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- ☆17Mar 2, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆168Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Aug 27, 2023Updated 3 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated last month
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 2 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆28Jun 14, 2026Updated 3 months ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆24Jul 30, 2025Updated last year
- Programs implementing the trio-binning genome assembly method☆22Nov 22, 2023Updated 2 years ago
- Genome Annotation Pipeline☆47Aug 20, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Using Deep Learning to predict gene annotations☆305Jul 22, 2026Updated last month
- ☆18Jan 29, 2025Updated last year
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Updated this week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆174Nov 4, 2025Updated 10 months ago
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 9 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 5 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago