A collection of tools for Genome Assembly analysis
☆23May 29, 2024Updated 2 years ago
Alternatives and similar repositories for Assembly_tools
Users that are interested in Assembly_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆17Nov 23, 2023Updated 2 years ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆14Updated this week
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Jun 7, 2024Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- ☆10Jan 27, 2025Updated last year
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated last month
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 7 months ago
- ☆18Jul 15, 2021Updated 4 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 11 months ago
- Organellar genome assembly☆30May 22, 2026Updated 2 weeks ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated last year
- ☆28Oct 20, 2023Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆99May 7, 2026Updated last month
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆31Apr 2, 2026Updated 2 months ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated last month
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- ☆42May 19, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆28May 12, 2026Updated 3 weeks ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 2 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆154Jun 2, 2026Updated last week
- ☆10Aug 27, 2023Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 2 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆27Jan 25, 2025Updated last year
- Genome Annotation Pipeline☆44Aug 20, 2024Updated last year
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- ☆18Jan 29, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆166Nov 4, 2025Updated 7 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago