Jwindler / Assembly_toolsLinks
A collection of tools for Genome Assembly analysis
☆22Updated last year
Alternatives and similar repositories for Assembly_tools
Users that are interested in Assembly_tools are comparing it to the libraries listed below
Sorting:
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- a software for annotating plant genes☆23Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 weeks ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆53Updated 5 months ago
- Genome annotation pipeline☆65Updated last year
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆24Updated 9 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Updated 2 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Updated 3 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A novel genome assembly pipeline based on deep learning☆68Updated last year
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated 2 weeks ago
- ☆44Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆35Updated last month
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆83Updated last week
- 一些关于基因组及转录组的知识☆40Updated last month
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 4 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last week
- Genome haplotype assembly and assessment method☆12Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated this week
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Updated 4 months ago
- Useful bioinformatic scripts☆59Updated last year