masai1116 / SHARE-seq-alignmentV2
Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2
☆16Updated last year
Alternatives and similar repositories for SHARE-seq-alignmentV2:
Users that are interested in SHARE-seq-alignmentV2 are comparing it to the libraries listed below
- ☆44Updated 3 years ago
- ☆14Updated last year
- Functions for single cell data analysis☆29Updated 3 years ago
- ☆28Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆30Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆12Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆44Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆40Updated 3 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆38Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- ☆26Updated 10 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated last month
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 3 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Single Cell Analysis Operations☆13Updated 11 months ago
- ☆35Updated 6 months ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Updated 5 years ago
- Mollecular Functional Portraits☆36Updated 10 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆94Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Codes used in pan-T cell analysis☆53Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆29Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆10Updated 6 months ago
- Draw phylogenetic trees of tumor evolution☆75Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 3 months ago
- Visualize the results of cell-cell communication analysis☆20Updated 2 years ago
- ☆49Updated 5 months ago