masai1116 / SHARE-seq-alignmentV2Links
Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2
☆16Updated 2 years ago
Alternatives and similar repositories for SHARE-seq-alignmentV2
Users that are interested in SHARE-seq-alignmentV2 are comparing it to the libraries listed below
Sorting:
- Codes used in pan-T cell analysis☆65Updated 2 years ago
- detecting spatial patterns of allele-specific expression☆11Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 6 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- ☆17Updated 2 years ago
- ☆60Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Updated 9 months ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Updated last year
- Analysis for BICCN cross-species primary motor cortex project☆23Updated 2 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Updated last year
- ☆49Updated 3 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆35Updated last year
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆32Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Updated 6 years ago
- ☆129Updated 3 years ago
- HCA data analysis☆19Updated 4 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Updated 5 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Construct Tumor Transition Zone Microenvironment☆53Updated 7 months ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆88Updated last year
- R package for pathway analysis in scRNA-seq data☆77Updated last year