☆20Jul 6, 2021Updated 5 years ago
Alternatives and similar repositories for EMT_score_calculation
Users that are interested in EMT_score_calculation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"☆18Aug 1, 2023Updated 3 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆11Sep 16, 2022Updated 3 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Reproducing result from the paper☆33May 12, 2021Updated 5 years ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated last year
- ☆12Sep 4, 2019Updated 7 years ago
- Bioinformatics Workflows☆19Nov 26, 2020Updated 5 years ago
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Compute and display Kaplan-Meier Curves with ggplot2☆24Oct 5, 2023Updated 2 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Aug 11, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DistMap☆15Nov 23, 2021Updated 4 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆30Dec 31, 2020Updated 5 years ago
- FOR my learing☆12Feb 19, 2026Updated 6 months ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆19May 25, 2025Updated last year
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Jan 22, 2018Updated 8 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆41Jan 14, 2024Updated 2 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆13Feb 19, 2021Updated 5 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆25May 12, 2025Updated last year
- An R Shiny module to put swiping interfaces in your app!☆13Mar 29, 2017Updated 9 years ago
- ☆14Mar 26, 2024Updated 2 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆25Jul 6, 2021Updated 5 years ago
- 🌓 Allele specific analyses across cell states and conditions☆11Nov 28, 2022Updated 3 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi …☆12Jan 20, 2018Updated 8 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Jan 25, 2022Updated 4 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆25Jun 13, 2022Updated 4 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 10 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 4 months ago
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Dec 22, 2025Updated 8 months ago