asrhou / scMatch

Related projects ⓘ

Alternatives and complementary repositories for scMatch

• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• Teichlab / cellity
  ☆36Updated 8 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆66Updated last year
• ElementoLab / scTCRseq
  Processing of single cell RNAseq data for the recovery of TCRs in python
  ☆26Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated last year
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆54Updated 7 months ago
• lcmmichielsen / scHPL
  ☆34Updated 6 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆50Updated 3 months ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆41Updated 2 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆89Updated 4 years ago
• bioFAM / slalom
  ☆28Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated 9 months ago
• theislab / AutoGeneS
  ☆56Updated 3 years ago
• krasnowlab / HLCA
  ☆61Updated 3 years ago
• YosefLab / scone
  ☆53Updated last month
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆46Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆42Updated last year
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆35Updated 4 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆40Updated 2 months ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆41Updated 4 months ago
• cellatlas / human
  ☆40Updated 3 weeks ago
• lhe17 / nebula
  ☆29Updated 8 months ago
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆36Updated 5 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆75Updated 3 weeks ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆19Updated 4 months ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆47Updated 4 years ago
• MarioniLab / FurtherMNN2018
  Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.
  ☆22Updated 4 years ago