Compendium of tools for the Imaging Platform
☆16Aug 20, 2026Updated last month
Alternatives and similar repositories for monorepo
Users that are interested in monorepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find profile pairs and compute retrieval metrics between them.☆25Oct 10, 2026Updated last week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Morphological features from images and masks made easy.☆52Oct 6, 2026Updated last week
- Single cell Morphology Quality Control (coSMicQC)☆11Oct 5, 2026Updated last week
- Image-based Profiling Handbook☆11Sep 18, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Oct 7, 2026Updated last week
- ☆22Aug 30, 2026Updated last month
- Images and other data from the JUMP Cell Painting Consortium☆192Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Updated this week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Oct 7, 2026Updated last week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆36Oct 8, 2026Updated last week
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆14Mar 15, 2019Updated 7 years ago
- Morphological profiling using deep learning☆131Updated this week
- ☆73Feb 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- Swift Phenotypic Analysis of Cells☆12Jun 8, 2025Updated last year
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆29Updated this week
- ☆24Aug 27, 2020Updated 6 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 7 years ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- ☆18Nov 27, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆27Aug 27, 2026Updated last month
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆182Oct 31, 2024Updated last year
- Deep Learning Based Cell Type Classification with Low-Res Brightfield Single Cell Images☆18Mar 28, 2019Updated 7 years ago
- Scripts associated with the 2023 Open Problems competition☆10Nov 23, 2023Updated 2 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆72Updated this week
- Miscellaneous documents☆13Dec 3, 2025Updated 10 months ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆34Mar 20, 2026Updated 6 months ago
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆25Updated this week
- [ICLR 2026] Lost in Tokenization: Context as the Key to Unlocking Biomolecular Understanding in Scientific LLMs☆19Nov 25, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated last year
- Contextual Vision Transformers for Robust Representation Learning☆15Oct 19, 2023Updated 2 years ago
- pseudobulking on an AnnData object☆38Jun 17, 2026Updated 4 months ago
- ☆12Jan 8, 2024Updated 2 years ago
- A fully scalable robust image feature extraction library.☆30Oct 8, 2026Updated last week
- Hack method to download all of your media from tadpoles.com☆17Mar 8, 2023Updated 3 years ago
- The omnibenchmark CLI☆18Updated this week