Compendium of tools for the Imaging Platform
☆16Aug 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for monorepo
Users that are interested in monorepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find profile pairs and compute retrieval metrics between them.☆24Aug 28, 2026Updated last week
- Morphological features from images and masks made easy.☆48Updated this week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- ☆22Aug 30, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Jul 30, 2026Updated last month
- Python package for image-based profiling☆144Updated this week
- cfDNA Sequencing Pipeline with UMI☆12Jun 11, 2026Updated 2 months ago
- Images and other data from the JUMP Cell Painting Consortium☆189Aug 31, 2026Updated last week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆36Updated this week
- Cell Painting Gallery☆138Updated this week
- ☆72Feb 14, 2025Updated last year
- Nextflow language support for Visual Studio Editor☆38Updated this week
- Morphological profiling using deep learning☆129Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- ☆24Aug 27, 2020Updated 6 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 7 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)☆15Apr 19, 2023Updated 3 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- ☆12Jul 11, 2022Updated 4 years ago
- rf☆12Jul 29, 2026Updated last month
- ☆27Aug 27, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆181Oct 31, 2024Updated last year
- ☆18Nov 27, 2017Updated 8 years ago
- Deep Learning Based Cell Type Classification with Low-Res Brightfield Single Cell Images☆18Mar 28, 2019Updated 7 years ago
- Scripts associated with the 2023 Open Problems competition☆10Nov 23, 2023Updated 2 years ago
- ☆13May 10, 2021Updated 5 years ago
- Miscellaneous documents☆13Dec 3, 2025Updated 9 months ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆34Mar 20, 2026Updated 5 months ago
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Contextual Vision Transformers for Robust Representation Learning☆15Oct 19, 2023Updated 2 years ago
- Hack method to download all of your media from tadpoles.com☆17Mar 8, 2023Updated 3 years ago
- The omnibenchmark CLI☆18Updated this week
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Gamified image segmentation quality estimation☆20May 1, 2025Updated last year
- A Julia implementation of the Targeted Minimum Loss-based Estimation☆26Updated this week
- ☆19Mar 31, 2026Updated 5 months ago