broadinstitute / monorepoLinks
Compendium of tools for the Imaging Platform
☆15Updated this week
Alternatives and similar repositories for monorepo
Users that are interested in monorepo are comparing it to the libraries listed below
Sorting:
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last month
- Access & manage biological ontologies.☆23Updated this week
- Multimodal Data (.h5mu) implementation for Python☆105Updated last month
- Multi-modal single cell analysis pipelines☆62Updated last month
- Slides and Notebooks for scverse 2024☆17Updated last year
- Flow & mass cytometry analytics.☆58Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆103Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆27Updated last year
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- ☆64Updated this week
- Single-cell multi-omics integration using Optimal Transport☆49Updated 5 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Updated this week
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Work with trained factor models in Python☆36Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆34Updated last year
- ☆98Updated 2 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 8 months ago
- Unified knowledge-driven network inference from omics data☆91Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated last week
- Distributed single-cell data analysis.☆35Updated last month
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆14Updated last year
- Spatial Single-Cell Analysis Toolkit☆107Updated 2 weeks ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆114Updated 2 weeks ago
- Find profile pairs and compute retrieval metrics between them.☆21Updated last week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated 2 months ago