Compendium of tools for the Imaging Platform
☆15Apr 28, 2026Updated last month
Alternatives and similar repositories for monorepo
Users that are interested in monorepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find profile pairs and compute retrieval metrics between them.☆22Updated this week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- Single cell Morphology Quality Control (coSMicQC)☆11May 19, 2026Updated last week
- Morphological features from images and masks made easy.☆47Apr 22, 2026Updated last month
- Images and other data from the JUMP Cell Painting Consortium☆185May 18, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python package for image-based profiling bioinformatics☆137Updated this week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 3 weeks ago
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 5 months ago
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Apr 30, 2026Updated 3 weeks ago
- First place algorithm in ISBI 2024 Light My Cell competition, label-free cell painting☆12Jun 3, 2024Updated last year
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆14Mar 15, 2019Updated 7 years ago
- ☆72Feb 14, 2025Updated last year
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Apr 15, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Mar 31, 2026Updated last month
- Nextflow language support for Visual Studio Editor☆37Updated this week
- Morphological profiling using deep learning☆125Oct 19, 2024Updated last year
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- A library for loading various atomic force microscopy file formats.☆23Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110May 18, 2026Updated last week
- Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)☆15Apr 19, 2023Updated 3 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 7 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep Learning Based Cell Type Classification with Low-Res Brightfield Single Cell Images☆18Mar 28, 2019Updated 7 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 2 years ago
- Course and exercises on deep learning for microscopy image analysis☆23Nov 25, 2025Updated 6 months ago
- Miscellaneous documents☆13Dec 3, 2025Updated 5 months ago
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- rf☆12Jun 23, 2025Updated 11 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28May 21, 2026Updated last week
- A standard library for biological research.☆37Sep 2, 2025Updated 8 months ago
- Correlated and Signal-Dependent Denoising☆31Apr 7, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Extensible pipeline tool for processing optical pooled screens data.☆23May 20, 2026Updated last week
- pseudobulking on an AnnData object☆35Mar 14, 2025Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 7 months ago
- Contextual Vision Transformers for Robust Representation Learning☆14Oct 19, 2023Updated 2 years ago
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆24May 21, 2026Updated last week
- ☆12Jul 11, 2022Updated 3 years ago
- ☆18Nov 27, 2017Updated 8 years ago