Alternatives and similar repositories for DeepProfiler:

Users that are interested in DeepProfiler are comparing it to the libraries listed below

• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆101Updated last week
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆60Updated last month
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 5 months ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆50Updated 10 months ago
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆79Updated this week
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated this week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆165Updated last month
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 6 months ago
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆20Updated 2 months ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated last month
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆50Updated last year
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆19Updated 2 months ago
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆91Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆35Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆78Updated last year
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆84Updated this week
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆63Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated last month
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆124Updated 2 weeks ago
• snap-stanford / stellar
  ☆64Updated 2 years ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆53Updated 4 years ago
• AllenCellModeling / pytorch_fnet
  Three dimensional cross-modal image inference
  ☆154Updated 4 years ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆26Updated 2 years ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆107Updated last year
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 9 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆86Updated last month
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆17Updated last month
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago