ethz-institute-of-microbiology / fisher_py
This python module allows to extract data from the RAW-file-format produces by devices from Thermo Fisher Scientific.
☆16Updated last month
Alternatives and similar repositories for fisher_py:
Users that are interested in fisher_py are comparing it to the libraries listed below
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆23Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆19Updated this week
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆19Updated 3 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆17Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆26Updated last month
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆28Updated last year
- MS/MS prediction for peptides☆22Updated 4 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- Python package for investigating the structural context of PTMs☆28Updated last month
- HUPO-PSI Standardized peptidoform notation☆16Updated last year
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated 7 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated this week
- A Python interface to proteomics data repositories☆32Updated 9 months ago
- A Rust library for parsing ProForma peptides and matching them against MS spectra, formally known as rustyms☆24Updated this week
- ☆16Updated 5 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated 2 weeks ago
- EuBIC 2023 developer's meeting☆13Updated 2 years ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆11Updated last year
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- ☆35Updated 3 weeks ago
- Streamlining Mass Spectrometry Data Visualization with Pandas☆11Updated last week
- ☆20Updated last year
- Relaunch of the initial MetFrag project.☆18Updated 2 weeks ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆18Updated 3 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆35Updated this week
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆13Updated last year
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆22Updated 4 months ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆32Updated 3 years ago
- Realtime quality control for mass spectrometry data acquisition☆15Updated 3 months ago