carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrectionView external linksLinks
Evaluating batch correction methods for image-based cell profiling
☆15Aug 11, 2025Updated 6 months ago
Alternatives and similar repositories for 2023_Arevalo_NatComm_BatchCorrection
Users that are interested in 2023_Arevalo_NatComm_BatchCorrection are comparing it to the libraries listed below
Sorting:
- Predicting assays Using Morphological Analysis☆14May 24, 2024Updated last year
- ☆22Jan 10, 2025Updated last year
- Find profile pairs and compute retrieval metrics between them.☆22Jan 27, 2026Updated 2 weeks ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆71Jun 6, 2025Updated 8 months ago
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- ☆12Jul 11, 2022Updated 3 years ago
- ☆13May 10, 2021Updated 4 years ago
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 4 months ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Apr 12, 2024Updated last year
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Feb 3, 2026Updated last week
- Python package for processing image-based profiling data☆135Updated this week
- collection of mass spectrometry imaging workflows☆22Feb 5, 2026Updated last week
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- Morphological profiling using deep learning☆123Oct 19, 2024Updated last year
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 6 months ago
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 4 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆33Aug 13, 2025Updated 6 months ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆23Mar 28, 2023Updated 2 years ago
- ☆27Jan 15, 2026Updated last month
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆32Aug 4, 2022Updated 3 years ago
- DOSY processing☆10Mar 11, 2022Updated 3 years ago
- ☆11Oct 7, 2025Updated 4 months ago
- A Data Science/Machine Learning Project. According to Bolster , Global Fraud Index (as at June 2022) is at 10,183 and growing. This is h…☆14Jul 25, 2022Updated 3 years ago
- Spectral entropy for mass spectrometry data.☆35Dec 25, 2025Updated last month
- Model-based tumour subclonal deconvolution using population genetics☆34Dec 2, 2025Updated 2 months ago
- Benchmarking of 1D pattern classification networks☆10Jul 19, 2023Updated 2 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆10Oct 14, 2025Updated 4 months ago
- A framework that predicts the molecular structure when given Infrared and 13C Nuclear magnetic resonance spectra without referring to any…☆10Jan 17, 2024Updated 2 years ago
- This is the public repo for the course HMMA238 'Software Development'☆10Apr 20, 2021Updated 4 years ago
- ☆33Dec 12, 2024Updated last year
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Mar 21, 2024Updated last year
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Dec 20, 2023Updated 2 years ago
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 8 years ago
- Noise learning for Raman microscopy☆13Dec 15, 2023Updated 2 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- ☆14Mar 6, 2022Updated 3 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago