Evaluating batch correction methods for image-based cell profiling
☆17Aug 11, 2025Updated last year
Alternatives and similar repositories for 2023_Arevalo_NatComm_BatchCorrection
Users that are interested in 2023_Arevalo_NatComm_BatchCorrection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find profile pairs and compute retrieval metrics between them.☆25Oct 10, 2026Updated last week
- ☆28Jan 10, 2025Updated last year
- Predicting assays Using Morphological Analysis☆14May 24, 2024Updated 2 years ago
- ☆12Jul 11, 2022Updated 4 years ago
- Python package for image-based profiling☆144Oct 9, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆80Jun 6, 2025Updated last year
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆21Updated this week
- Morphological profiling using deep learning☆131Updated this week
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated last year
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Apr 12, 2024Updated 2 years ago
- UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on t…☆12Nov 4, 2020Updated 5 years ago
- ☆13May 10, 2021Updated 5 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆48Dec 20, 2023Updated 2 years ago
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Defined MRM transitions from untargeted metabolomics data☆12Nov 13, 2023Updated 2 years ago
- Codebase for training the SubCell models☆25Updated this week
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆13Apr 8, 2026Updated 6 months ago
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆24Mar 28, 2023Updated 3 years ago
- Source codes for the reproduction of scButterfly☆13Mar 18, 2024Updated 2 years ago
- QC systems for metabolomics studies☆11Oct 8, 2026Updated last week
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated 2 years ago
- Analysis code for the TAP-seq manuscript.☆12Jun 25, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- These are the famous Uppsala Software Factory programs, rescued into GitHub.☆10Nov 3, 2022Updated 3 years ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 4 months ago
- Collection of ASE (Atomic Simulation Environment) Scripts for Bimetallic Nanoparticles☆12Oct 23, 2021Updated 4 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Jul 22, 2026Updated 2 months ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆28Aug 18, 2026Updated 2 months ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Data Science/Machine Learning Project. According to Bolster , Global Fraud Index (as at June 2022) is at 10,183 and growing. This is h…☆15Jul 25, 2022Updated 4 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆20Aug 9, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- ☆15Aug 10, 2026Updated 2 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- A scoring function model based on 3D convolutional neural network for protein-ligand binding affinity prediction.☆17Oct 8, 2021Updated 5 years ago