Evaluating batch correction methods for image-based cell profiling
☆15Aug 11, 2025Updated 8 months ago
Alternatives and similar repositories for 2023_Arevalo_NatComm_BatchCorrection
Users that are interested in 2023_Arevalo_NatComm_BatchCorrection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find profile pairs and compute retrieval metrics between them.☆22Apr 3, 2026Updated 2 weeks ago
- Predicting assays Using Morphological Analysis☆14May 24, 2024Updated last year
- Python package for processing image-based profiling data☆137Updated this week
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆73Jun 6, 2025Updated 10 months ago
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on t…☆11Nov 4, 2020Updated 5 years ago
- Morphological profiling using deep learning☆124Oct 19, 2024Updated last year
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- ☆13May 10, 2021Updated 4 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆23Mar 28, 2023Updated 3 years ago
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 7 months ago
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated last year
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆33Aug 4, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 10 months ago
- collection of mass spectrometry imaging workflows☆22Mar 17, 2026Updated last month
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 4 months ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- Collection of ASE (Atomic Simulation Environment) Scripts for Bimetallic Nanoparticles☆11Oct 23, 2021Updated 4 years ago
- parKVFinder: thread-level parallel KVFinder☆15May 9, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the public repo for the course HMMA238 'Software Development'☆11Apr 20, 2021Updated 4 years ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 4 years ago
- Example CellProfiler pipelines.☆19Jul 19, 2022Updated 3 years ago
- ☆11Jun 4, 2021Updated 4 years ago
- rf☆12Jun 23, 2025Updated 9 months ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Mar 16, 2026Updated last month
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- Active Learning Helps Pretrained Models Learn the Intended Task (https://arxiv.org/abs/2204.08491) by Alex Tamkin, Dat Nguyen, Salil Desh…☆11Nov 22, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- AutoTag-YOLOv8 is an object detection project that uses the YOLOv8 model and leverages the power of SAM and DINGO models for automatic la…☆13May 3, 2023Updated 2 years ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆132Mar 2, 2026Updated last month
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 7 months ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆18Apr 10, 2026Updated last week
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 5 years ago
- Contextual Vision Transformers for Robust Representation Learning☆15Oct 19, 2023Updated 2 years ago
- 3D_Coronary_Artery_Segmentation☆12Feb 23, 2022Updated 4 years ago