biocompibens / phenexplainLinks
Phenexplain source code
☆12Updated 2 years ago
Alternatives and similar repositories for phenexplain
Users that are interested in phenexplain are comparing it to the libraries listed below
Sorting:
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆63Updated 3 months ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆21Updated 2 years ago
- Cell Painting Gallery☆104Updated this week
- External repo for the EFAAR benchmarking paper☆20Updated last month
- ☆15Updated 7 months ago
- ☆65Updated 6 months ago
- Images and other data from the JUMP Cell Painting Consortium☆176Updated last week
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆23Updated 8 months ago
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆16Updated 2 years ago
- Predicting assays Using Morphological Analysis☆13Updated last year
- ☆36Updated 10 months ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated last month
- Evaluating batch correction methods for image-based cell profiling☆14Updated 3 weeks ago
- ☆12Updated last year
- A deep-learning framework for multi-omics integration☆27Updated 2 years ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Updated last year
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆36Updated 5 months ago
- A repository for reproducing experiments from the TxPert paper☆15Updated 3 months ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆33Updated 6 months ago
- Label Free Prediction of Cell Painting from Brightfield Images☆30Updated 3 years ago
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆33Updated 5 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- ☆29Updated this week
- ☆13Updated 2 years ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆305Updated last week
- Python package for processing image-based profiling data☆124Updated this week
- Multi-task deep learning framework for multi-omics data analysis☆48Updated 3 years ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆29Updated 3 years ago