biocompibens / phenexplainLinks
Phenexplain source code
☆12Updated last year
Alternatives and similar repositories for phenexplain
Users that are interested in phenexplain are comparing it to the libraries listed below
Sorting:
- Documentation for installing and using of DeepProfiler☆8Updated last year
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆60Updated 3 weeks ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆21Updated 2 years ago
- ☆13Updated 5 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆21Updated 5 months ago
- External repo for the EFAAR benchmarking paper☆20Updated last week
- ☆63Updated 4 months ago
- Cell Painting Gallery☆93Updated last week
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆31Updated 2 months ago
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆16Updated last year
- ☆8Updated 2 years ago
- ☆38Updated 8 months ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆53Updated 11 months ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆31Updated 4 months ago
- Evaluating batch correction methods for image-based cell profiling☆14Updated 5 months ago
- ☆55Updated 2 years ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Updated 3 years ago
- Predicting assays Using Morphological Analysis☆14Updated last year
- Images and other data from the JUMP Cell Painting Consortium☆173Updated last week
- Label Free Prediction of Cell Painting from Brightfield Images☆30Updated 2 years ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Updated 3 years ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆12Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 9 months ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 2 years ago
- This repo will contain the code for training DINO models and extracting features☆11Updated last year
- A deep-learning framework for multi-omics integration☆26Updated last year
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 4 months ago
- Python 3 library for the augmentation & normalization of H&E images☆56Updated 2 years ago
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 5 months ago