biocompibens / phenexplainLinks
Phenexplain source code
☆14Updated 3 months ago
Alternatives and similar repositories for phenexplain
Users that are interested in phenexplain are comparing it to the libraries listed below
Sorting:
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆71Updated 8 months ago
- External repo for the EFAAR benchmarking paper☆25Updated last week
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆23Updated 2 years ago
- Cell Painting Gallery☆121Updated 2 weeks ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Updated last year
- Label Free Prediction of Cell Painting from Brightfield Images☆34Updated 3 years ago
- ☆72Updated 11 months ago
- Images and other data from the JUMP Cell Painting Consortium☆182Updated 2 weeks ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆53Updated 2 weeks ago
- ☆22Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆80Updated 6 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆61Updated last year
- Evaluating batch correction methods for image-based cell profiling☆15Updated 6 months ago
- Predicting assays Using Morphological Analysis☆14Updated last year
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆19Updated 4 months ago
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆38Updated 10 months ago
- ☆14Updated last year
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Updated 3 years ago
- ☆36Updated last year
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆49Updated last month
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆41Updated 10 months ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Updated last year
- A deep-learning framework for multi-omics integration☆32Updated 2 years ago
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- A repository for reproducing experiments from the TxPert paper☆25Updated last month
- Multi-task deep learning framework for multi-omics data analysis☆49Updated 3 years ago
- PAthological Data Obsession - cloud native digital pathology datasets☆18Updated 2 years ago
- A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)☆152Updated 3 weeks ago
- Variational Auto-Encoder that generates synthetic gene expression data☆25Updated 2 years ago