crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
Label Free Prediction of Cell Painting from Brightfield Images
☆26Updated 2 years ago
Alternatives and similar repositories for Label-free-prediction-of-Cell-Painting-from-brightfield-images:
Users that are interested in Label-free-prediction-of-Cell-Painting-from-brightfield-images are comparing it to the libraries listed below
- ☆59Updated this week
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆20Updated last month
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆52Updated 3 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 5 months ago
- ☆31Updated 2 years ago
- Morphological profiling using deep learning☆112Updated 4 months ago
- Cloud-based data annotation tools for biological images☆77Updated last year
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆47Updated 7 months ago
- Cell Painting Gallery☆75Updated this week
- computer vision models for single-cell phenotyping☆41Updated this week
- Codebase for "A Foundation Model for Cell Segmentation"☆70Updated this week
- Python package for processing image-based profiling data☆87Updated 2 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆145Updated this week
- Learn morphological states of dynamic cells☆12Updated last year
- First place algorithm in ISBI 2024 Light My Cell competition, label-free cell painting☆12Updated 8 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 6 months ago
- ☆139Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆107Updated this week
- Images and other data from the JUMP Cell Painting Consortium☆165Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- Python package for deep learning based image to image transformation☆50Updated 8 months ago
- CellProfiler tutorial pipelines and images☆89Updated 3 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated last month
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated 11 months ago
- Cell tracking and segmentation software☆103Updated this week
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆20Updated last year