crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
Label Free Prediction of Cell Painting from Brightfield Images
☆26Updated 2 years ago
Alternatives and similar repositories for Label-free-prediction-of-Cell-Painting-from-brightfield-images:
Users that are interested in Label-free-prediction-of-Cell-Painting-from-brightfield-images are comparing it to the libraries listed below
- ☆58Updated last month
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆20Updated last month
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆49Updated 3 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 5 months ago
- Cell Painting Gallery☆75Updated this week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆47Updated 7 months ago
- Morphological profiling using deep learning☆112Updated 3 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆69Updated this week
- computer vision models for single-cell phenotyping☆40Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆20Updated 3 years ago
- Cloud-based data annotation tools for biological images☆77Updated last year
- CellProfiler tutorial pipelines and images☆87Updated 3 months ago
- ☆136Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆163Updated last month
- ☆31Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆145Updated this week
- First place algorithm in ISBI 2024 Light My Cell competition, label-free cell painting☆12Updated 8 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆107Updated this week
- Python package for processing image-based profiling data☆87Updated last week
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆17Updated last month
- An introduction to deepcell and deep learning☆144Updated 3 months ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated last month
- Learn morphological states of dynamic cells☆12Updated last year
- Python package for deep learning based image to image transformation☆50Updated 8 months ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆37Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated last year
- ☆35Updated 3 months ago
- External repo for the EFAAR benchmarking paper☆18Updated last week
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 2 years ago
- Evaluating batch correction methods for image-based cell profiling☆11Updated last month