Alternatives and similar repositories for cell-health

Users that are interested in cell-health are comparing it to the libraries listed below

• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆54Updated 2 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆21Updated 2 weeks ago
• scverse / spatialdata-notebooks
  ☆57Updated this week
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆68Updated last week
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆117Updated 10 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆121Updated 2 weeks ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆19Updated last month
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆28Updated last month
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆82Updated last month
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆70Updated 4 years ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆50Updated last week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated 2 weeks ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated 3 weeks ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆22Updated 3 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 10 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆32Updated last month
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• scverse / spatialdata-io
  ☆68Updated this week
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated 2 years ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated 2 weeks ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆43Updated last month
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆65Updated 6 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆96Updated last month
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆62Updated 2 weeks ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆93Updated 5 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 5 months ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆48Updated 3 months ago
• CellProfiling / subcell-embed
  Codebase for training the SubCell models
  ☆15Updated 2 weeks ago