broadinstitute / cell-health

Related projects: ⓘ

• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆48Updated 4 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆48Updated 3 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
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• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆13Updated 5 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated last year
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆19Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆22Updated 4 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆72Updated 3 weeks ago
• ckmah / bento-tools
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  ☆63Updated last week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆23Updated last year
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆25Updated last month
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆26Updated last year
• broadchenf / Slideseq
  ☆12Updated 5 years ago
• labsyspharm / mcmicro
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  ☆102Updated 2 weeks ago
• AI4SCR / ATHENA
  ☆31Updated 3 weeks ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆76Updated this week
• nolanlab / CODEX
  Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
  ☆40Updated 2 years ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆51Updated 6 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆55Updated 10 months ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆45Updated this week
• feldman4 / OpticalPooledScreens_2019
  Examples and code for optical pooled screens
  ☆10Updated last year
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆60Updated 3 years ago
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  ☆28Updated 4 months ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
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  ☆22Updated this week
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆32Updated this week
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆38Updated 2 years ago
• nolanlab / REDSEA
  ☆16Updated 5 months ago