broadinstitute / cell-healthLinks
Predicting Cell Health with Morphological Profiles
☆39Updated 3 years ago
Alternatives and similar repositories for cell-health
Users that are interested in cell-health are comparing it to the libraries listed below
Sorting:
- Methods for Image-Based Cell Profiling☆51Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Python package for processing image-based profiling data☆127Updated 2 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Morphological profiling using deep learning☆122Updated last year
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Find profile pairs and compute metrics between them.☆20Updated 3 weeks ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 3 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated 2 weeks ago
- Codebase for training the SubCell models☆16Updated last week
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 3 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last month
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- ☆62Updated this week
- Community-contributed and experimental CellProfiler modules.☆69Updated this week
- ☆66Updated 9 months ago
- A data-centric flow/mass cytometry automated analysis framework☆43Updated 9 months ago
- ☆15Updated last year
- Framework for image and flow cytometry analysis☆31Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated this week
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆54Updated 2 weeks ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- A parser to read .imzML files with python☆46Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆36Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆30Updated 3 years ago