Predicting Cell Health with Morphological Profiles
☆41Jan 26, 2022Updated 4 years ago
Alternatives and similar repositories for cell-health
Users that are interested in cell-health are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Morphological profiling using deep learning☆129Updated this week
- ☆24Aug 27, 2020Updated 5 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Python package for image-based profiling☆144Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single cell Morphology Quality Control (coSMicQC)☆11Aug 3, 2026Updated last week
- Code and examples for optical pooled screens (updated protocol).☆15Jan 28, 2024Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆36Aug 4, 2022Updated 4 years ago
- Find profile pairs and compute retrieval metrics between them.☆23Aug 1, 2026Updated last week
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆20Updated this week
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- U-net based segmentation of nuclei in microscopy images☆56Sep 13, 2018Updated 7 years ago
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Repository for vLume releases and changes☆11Oct 12, 2020Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- Microsnoop: A generalist tool for microscopy image representation☆13Feb 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Jupyter Notebooks for the Image Data Resource☆19Jun 25, 2026Updated last month
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆24Updated this week
- Morphological features from images and masks made easy.☆48Jul 7, 2026Updated last month
- CapsNet implementation in keras for R☆12May 8, 2018Updated 8 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Jul 13, 2026Updated 3 weeks ago
- Curated metadata for all studies published in the Image Data Resource☆17May 19, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆67Apr 23, 2026Updated 3 months ago
- A curated list of awesome cytodata resources☆94Nov 15, 2023Updated 2 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 11 months ago
- simple package for augmentation of n-dimensional arrays☆33Aug 10, 2023Updated 3 years ago
- ☆15Jul 7, 2023Updated 3 years ago