broadinstitute / cell-healthLinks
Predicting Cell Health with Morphological Profiles
☆37Updated 3 years ago
Alternatives and similar repositories for cell-health
Users that are interested in cell-health are comparing it to the libraries listed below
Sorting:
- Methods for Image-Based Cell Profiling☆51Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Morphological profiling using deep learning☆119Updated 11 months ago
- Python package for processing image-based profiling data☆124Updated last week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated this week
- Community-contributed and experimental CellProfiler modules.☆68Updated last week
- Optimizing the Cell Painting assay for image-based profiling☆21Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆89Updated 2 weeks ago
- Framework for image and flow cytometry analysis☆29Updated 2 months ago
- CellProfiler tutorial pipelines and images☆94Updated 2 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆36Updated 2 weeks ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆16Updated this week
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- Find profile pairs and compute metrics between them.☆19Updated 3 weeks ago
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- ☆65Updated 7 months ago
- ☆59Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Multiple-choice microscopy pipeline☆135Updated last week
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- A toolkit for processing multiplexed tissue images☆64Updated this week
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- Integrated pipeline for multiplexed image analysis☆96Updated 6 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated last month
- A data-centric flow/mass cytometry automated analysis framework☆42Updated 8 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 4 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago