broadinstitute / cell-health
Predicting Cell Health with Morphological Profiles
☆36Updated 3 years ago
Alternatives and similar repositories for cell-health:
Users that are interested in cell-health are comparing it to the libraries listed below
- Methods for Image-Based Cell Profiling☆50Updated 9 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆16Updated 3 weeks ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated last month
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated 3 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- ☆59Updated this week
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆48Updated this week
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆26Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆40Updated 2 weeks ago
- ☆25Updated 4 months ago
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- Spatial Single-Cell Analysis Toolkit☆85Updated 3 weeks ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 2 weeks ago
- Python package for processing image-based profiling data☆87Updated 2 weeks ago
- Minimum Information about Tissue Imaging☆20Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆38Updated this week
- ☆27Updated 4 months ago
- A toolkit for processing multiplexed tissue images☆54Updated this week
- Integrated pipeline for multiplexed image analysis☆80Updated 3 months ago
- ☆48Updated this week
- ☆31Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆74Updated last month
- ☆41Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆38Updated 7 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆62Updated last week
- ☆11Updated 6 years ago