broadinstitute / cell-healthLinks
Predicting Cell Health with Morphological Profiles
☆38Updated 3 years ago
Alternatives and similar repositories for cell-health
Users that are interested in cell-health are comparing it to the libraries listed below
Sorting:
- Methods for Image-Based Cell Profiling☆51Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Find profile pairs and compute metrics between them.☆20Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated 3 weeks ago
- Python package for processing image-based profiling data☆124Updated 2 weeks ago
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- ☆61Updated last week
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Morphological profiling using deep learning☆119Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated last month
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- A data-centric flow/mass cytometry automated analysis framework☆43Updated 9 months ago
- Community-contributed and experimental CellProfiler modules.☆69Updated last week
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 2 months ago
- ☆66Updated 8 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated this week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Codebase for training the SubCell models☆16Updated this week
- Framework for image and flow cytometry analysis☆30Updated 3 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 2 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆97Updated last month
- A parser to read .imzML files with python☆46Updated 11 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- ☆29Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago