Alternatives and similar repositories for ProteinEvolutionToolbox:

Users that are interested in ProteinEvolutionToolbox are comparing it to the libraries listed below

• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆23Updated 4 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated 2 weeks ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆30Updated 2 years ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆25Updated 3 weeks ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated this week
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated last year
• ibivu / PRALINE
  Next-generation PRALINE sequence alignment program.
  ☆9Updated 5 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 3 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆31Updated 8 months ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆12Updated 5 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆45Updated 6 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆34Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆10Updated 3 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆55Updated 4 months ago
• jcg / d-tailor
  ☆13Updated 6 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆14Updated last year
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆11Updated last year
• Pharmaco-OmicsLab / EasyPubPlot
  Shiny app to easily create publishable plots for scientific papers
  ☆27Updated this week
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• baoilleach / BioinformaticsPracticals
  Practical Introduction to Bioinformatics and Systems Biology with R (mainly)
  ☆19Updated 14 years ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆10Updated 3 years ago