☆15Mar 25, 2016Updated 10 years ago
Alternatives and similar repositories for ProteinEvolutionToolbox
Users that are interested in ProteinEvolutionToolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated 2 years ago
- Computational biology utility scripts☆19Apr 16, 2025Updated last year
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- ☆21Jul 12, 2016Updated 9 years ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆15Jan 23, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python script to perform QM/MM calculation.☆13May 28, 2026Updated last month
- Conservation analysis of homologous proteins with Python☆13Jul 11, 2021Updated 4 years ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆26Jul 15, 2024Updated last year
- Degenerate Codon Design☆13Feb 13, 2020Updated 6 years ago
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 2 years ago
- A Python workflow to study protein-protein coevolution and interaction☆21Jun 30, 2017Updated 9 years ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Mar 7, 2022Updated 4 years ago
- Guiding directed protein evolution with Bayesian Optimization - First Steps☆16Sep 13, 2020Updated 5 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆62Apr 8, 2021Updated 5 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Simulating genealogies using charged particles☆31Apr 21, 2015Updated 11 years ago
- ☆22Mar 22, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 3 months ago
- ☆10Mar 5, 2019Updated 7 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Galaxy tools and wrappers for sequence analysis☆17Jun 11, 2024Updated 2 years ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆25Oct 18, 2019Updated 6 years ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Oct 1, 2020Updated 5 years ago
- ☆30May 15, 2025Updated last year
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Repository for collective design of an iGEM DNA distribution☆45Apr 7, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Materials for the 2019 uncoast unconference☆11Apr 26, 2019Updated 7 years ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Apr 26, 2026Updated 2 months ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Bioinformatics benchmarking package, based on the original BioBench developed by Albayraktaroglu et al, 2005☆13Dec 13, 2018Updated 7 years ago
- Slides for my CascadiaRConf keynote☆11Jun 2, 2018Updated 8 years ago