idekerlab / MuSICLinks
Multi-Scale Integrated Cell
☆36Updated 3 years ago
Alternatives and similar repositories for MuSIC
Users that are interested in MuSIC are comparing it to the libraries listed below
Sorting:
- ☆93Updated last month
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- Biological Network Integration using Convolutions☆63Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 3 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆155Updated this week
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆31Updated 7 years ago
- a dataloader to work with large single cell datasets from lamindb☆30Updated last week
- Flow & mass cytometry analytics.☆57Updated last week
- ☆19Updated 2 years ago
- CliXO algorithm re-implemented☆16Updated 4 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Jax code for functional genomics ML☆14Updated 9 months ago
- Multimodal Data (.h5mu) implementation for Python☆102Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 5 months ago
- A data-centric flow/mass cytometry automated analysis framework☆42Updated 10 months ago
- ☆38Updated last month
- pytorch dataloaders for single-cell perturbation data☆37Updated this week
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated 2 weeks ago
- Single-cell multi-omics integration using Optimal Transport☆48Updated 3 months ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- ☆65Updated last month
- bioinformatics plotting and tools☆59Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆95Updated 10 months ago