recursionpharma / maes_microscopy
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
☆58Updated 5 months ago
Alternatives and similar repositories for maes_microscopy:
Users that are interested in maes_microscopy are comparing it to the libraries listed below
- ☆60Updated 2 months ago
- Cell Painting Gallery☆85Updated last month
- External repo for the EFAAR benchmarking paper☆19Updated last month
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆21Updated 3 months ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆21Updated 2 months ago
- Images and other data from the JUMP Cell Painting Consortium☆168Updated 2 months ago
- ☆38Updated 6 months ago
- Evaluating batch correction methods for image-based cell profiling☆12Updated 3 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- ☆12Updated 3 months ago
- Label Free Prediction of Cell Painting from Brightfield Images☆29Updated 2 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆51Updated 9 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆53Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆25Updated last week
- ☆8Updated 2 years ago
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆16Updated last year
- Documentation for installing and using of DeepProfiler☆8Updated last year
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆32Updated last month
- Python package for processing image-based profiling data☆112Updated last week
- Phenexplain source code☆12Updated last year
- ☆9Updated 9 months ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆112Updated 2 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 9 months ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆21Updated 2 years ago
- Predicting assays Using Morphological Analysis☆14Updated 11 months ago
- PDD: Awesome Phenotypic Drug Discovery☆26Updated this week
- Morphological profiling using deep learning☆115Updated 6 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆81Updated 3 weeks ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆14Updated 8 months ago