recursionpharma / maes_microscopyLinks
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
☆63Updated 4 months ago
Alternatives and similar repositories for maes_microscopy
Users that are interested in maes_microscopy are comparing it to the libraries listed below
Sorting:
- ☆65Updated 7 months ago
- External repo for the EFAAR benchmarking paper☆20Updated 2 weeks ago
- Cell Painting Gallery☆109Updated 3 weeks ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆37Updated 7 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆23Updated 9 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- Label Free Prediction of Cell Painting from Brightfield Images☆32Updated 3 years ago
- Images and other data from the JUMP Cell Painting Consortium☆177Updated this week
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆36Updated 6 months ago
- ☆16Updated 9 months ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Updated 3 years ago
- Evaluating batch correction methods for image-based cell profiling☆14Updated last month
- Python package for processing image-based profiling data☆124Updated last week
- Phenexplain source code☆13Updated 2 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- Morphological profiling using deep learning☆119Updated 11 months ago
- computer vision models for single-cell phenotyping☆71Updated last week
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆22Updated 2 years ago
- PDD: Awesome Phenotypic Drug Discovery☆34Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- ☆36Updated 11 months ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Updated 2 years ago
- ☆22Updated 6 months ago
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆16Updated 3 weeks ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆124Updated 8 months ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Updated last year
- A deep-learning framework for multi-omics integration☆28Updated 2 years ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆38Updated 5 months ago
- ☆30Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated last month