recursionpharma / maes_microscopy
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
☆55Updated 3 months ago
Alternatives and similar repositories for maes_microscopy:
Users that are interested in maes_microscopy are comparing it to the libraries listed below
- ☆59Updated 2 weeks ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆20Updated 2 months ago
- External repo for the EFAAR benchmarking paper☆18Updated last month
- Cell Painting Gallery☆76Updated last week
- Label Free Prediction of Cell Painting from Brightfield Images☆26Updated 2 years ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆20Updated 2 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 5 months ago
- Evaluating batch correction methods for image-based cell profiling☆11Updated 2 months ago
- Images and other data from the JUMP Cell Painting Consortium☆165Updated 2 weeks ago
- ☆36Updated 4 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆71Updated last week
- O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆31Updated 9 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆47Updated 8 months ago
- A Vision-Language Benchmark for Microscopy Understanding☆23Updated 2 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated 11 months ago
- ☆12Updated last month
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆71Updated 4 months ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 7 months ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆20Updated last year
- PDD: Awesome Phenotypic Drug Discovery☆21Updated this week
- ☆54Updated 2 weeks ago
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆15Updated last year
- Deep learning on histopathology images.☆111Updated 3 years ago
- Phenexplain source code☆12Updated last year
- A deep-learning framework for multi-omics integration☆24Updated last year
- ☆57Updated 6 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last month
- A vision language model for gigapixel whole slide images in histopathology☆36Updated 5 months ago