recursionpharma / maes_microscopyLinks
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
☆64Updated 2 months ago
Alternatives and similar repositories for maes_microscopy
Users that are interested in maes_microscopy are comparing it to the libraries listed below
Sorting:
- ☆65Updated 6 months ago
- Cell Painting Gallery☆104Updated 3 weeks ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆22Updated 7 months ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆33Updated 6 months ago
- External repo for the EFAAR benchmarking paper☆20Updated last month
- Label Free Prediction of Cell Painting from Brightfield Images☆30Updated 3 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 3 weeks ago
- Images and other data from the JUMP Cell Painting Consortium☆174Updated this week
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆34Updated 5 months ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Updated 3 years ago
- computer vision models for single-cell phenotyping☆67Updated this week
- ☆15Updated 7 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆37Updated 4 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- Evaluating batch correction methods for image-based cell profiling☆14Updated 2 weeks ago
- Python package for processing image-based profiling data☆121Updated 2 weeks ago
- ☆36Updated 10 months ago
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆16Updated last year
- Phenexplain source code☆12Updated 2 years ago
- ☆16Updated 5 months ago
- PDD: Awesome Phenotypic Drug Discovery☆34Updated last month
- ☆12Updated last year
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆121Updated last month
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Updated 2 years ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆21Updated 2 years ago
- Morphological profiling using deep learning☆117Updated 10 months ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Updated last year
- ☆29Updated last week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆58Updated last year