clindet / rctlLinks
A set of command line tools based on R and JavaScript.
☆18Updated 5 years ago
Alternatives and similar repositories for rctl
Users that are interested in rctl are comparing it to the libraries listed below
Sorting:
- anor: an annotation and visualization system based on R and Shiny framework☆33Updated 5 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 6 years ago
- A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform☆56Updated 3 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆22Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DriverPower☆26Updated 11 months ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆19Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- Interactive Differential Expression Analyzer☆37Updated 5 years ago
- ☆35Updated 5 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Somatic point mutation caller☆17Updated 9 years ago
- Multiplex Primer Design☆21Updated 5 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 8 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Interactive eQTL visualizations☆13Updated 3 years ago
- Visualization tool for genetic reassortment☆21Updated 2 months ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago