YaoLab-Bioinfo / MaizeSNPDB
A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
☆13Updated 2 years ago
Alternatives and similar repositories for MaizeSNPDB:
Users that are interested in MaizeSNPDB are comparing it to the libraries listed below
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 3 years ago
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Updated 6 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- The knowledge of cloned rice genes lost in the information of rice functional genomics studies☆24Updated last year
- QTL mapping with binmap data☆17Updated 5 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- ☆16Updated last year
- ☆21Updated 6 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 3 months ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- ☆16Updated 4 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 6 years ago
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- FASTA files of chromosomes and genes, gff files for gene models.☆9Updated 6 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 months ago
- Build haplotye and generate figures☆18Updated 3 years ago
- ☆11Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆30Updated 2 weeks ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆16Updated 5 months ago
- Perform GWAS using the FarmCPU model.☆23Updated 3 months ago
- blupADC:An useful tool for animal and plant breeding☆24Updated 4 months ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆18Updated 3 weeks ago
- Working on cotton resequencing☆11Updated 4 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- Whole Genome Annotation Pipeline☆15Updated last year