Alternatives and similar repositories for MaizeSNPDB

Users that are interested in MaizeSNPDB are comparing it to the libraries listed below

• YaoLab-Bioinfo / LIRBase
  A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
  ☆16Updated 3 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 3 years ago
• YaoLab-Bioinfo / funRiceGenes
  The knowledge of cloned rice genes lost in the information of rice functional genomics studies
  ☆24Updated last month
• YaoLab-Bioinfo / ECOGEMS
  Efficient compression and retrieve of genotype data with integer sparse matrices
  ☆16Updated last month
• JaeYoonKim72 / GMStool
  ☆16Updated 4 years ago
• YaoLab-Bioinfo / binQTL
  QTL mapping with binmap data
  ☆18Updated 5 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆36Updated last month
• ZhangRenL / geneHapR
  ☆13Updated 8 months ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 6 months ago
• hemstrow / snpR
  ☆30Updated 3 weeks ago
• whweve / IntAssoPlot
  ☆16Updated last year
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 3 weeks ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• xuzhougeng / binmapr
  R package for binmap
  ☆13Updated last year
• YTLogos / BnaSNPDB
  An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
  ☆12Updated 2 months ago
• GuangchuangYu / plotting_tree_with_data
  Two methods for mapping and visualizing associated data on phylogeny using ggtree
  ☆12Updated 6 years ago
• hewm2008 / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆14Updated 2 years ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• esctrionsit / snphub
  A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.
  ☆19Updated 6 months ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 5 months ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆19Updated 2 months ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆25Updated 4 months ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆20Updated 10 months ago
• TXiang-lab / blupADC
  blupADC:An useful tool for animal and plant breeding
  ☆27Updated 5 months ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• wangzihell / CAU-TibetanWheatSeq
  Customized codes used in Tibetan wheat sequencing project.
  ☆13Updated 2 years ago
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago