ScaleBio / ScaleRna
ScaleBio Single-cell RNA Nextflow Workflow
☆30Updated this week
Alternatives and similar repositories for ScaleRna
Users that are interested in ScaleRna are comparing it to the libraries listed below
Sorting:
- Pipeline for the analysis of PE ChIP-seq data☆14Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- An R package to time somatic mutations☆61Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆21Updated 5 years ago
- ☆55Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆59Updated 4 months ago
- A snakemake pipeline for 10X genomics cellranger☆20Updated 4 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆37Updated 5 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 4 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆12Updated this week
- Pipeline for Cut&Tag analysis☆21Updated 3 weeks ago
- workshop website on readthedocs☆19Updated 2 weeks ago
- ☆34Updated 5 years ago
- ☆38Updated 5 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated 2 weeks ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆58Updated 5 months ago