ScaleBio / ScaleRnaLinks
ScaleBio Single-cell RNA Nextflow Workflow
☆38Updated 3 months ago
Alternatives and similar repositories for ScaleRna
Users that are interested in ScaleRna are comparing it to the libraries listed below
Sorting:
- Genomic coordinates of problematic genomic regions as GRanges☆45Updated 2 months ago
- A rust framework to make using alevin-fry even simpler☆58Updated 6 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆91Updated 7 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Tutorial Website☆60Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Pipeline for Cut&Tag analysis☆24Updated 6 months ago
- An R interface to the MEME Suite☆52Updated 4 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- ☆32Updated 7 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated this week
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated 11 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago