Fast, efficient, lossless compression of fastq files
☆14Jan 4, 2021Updated 5 years ago
Alternatives and similar repositories for slimfastq
Users that are interested in slimfastq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Sep 11, 2020Updated 6 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- BEAST+BEAGLE compiled with NVIDIA CUDA☆12Jul 19, 2024Updated 2 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Dec 7, 2021Updated 4 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 7 years ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- Pipeline in place at the UGI for DNA level analysis☆12Aug 29, 2016Updated 10 years ago
- Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in v…☆22Oct 8, 2026Updated 3 weeks ago
- Finds knight's tours on square boards of arbitrary size that follow Warnsdorff's rule☆14Jun 5, 2011Updated 15 years ago
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 4 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆82May 31, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆25Updated this week
- Python bindings to bwa mem☆33Mar 26, 2020Updated 6 years ago
- Jupyter notebooks - A tool to write and share executable notebooks and data visualization☆10Feb 5, 2026Updated 8 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- https://rivet.gg/blog/2025-03-23-what-would-a-w3c-standard-look-like-for-stateful-serverless-☆11Mar 25, 2025Updated last year
- Analytics toolkit for Illumina sequencer metrics.☆12Aug 16, 2024Updated 2 years ago
- A userspace tunnel between two hosts mapping ports on client machine to addresses reachable from server machine.☆18Feb 25, 2022Updated 4 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducible Research in Finse☆10Aug 5, 2020Updated 6 years ago
- Colorized cat command in Python. Uses Pygments to do automatic syntax highlighting.☆13Dec 12, 2019Updated 6 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- ixgbe driver for Redox based on ixy.rs☆11Jul 30, 2019Updated 7 years ago
- I simple library to store/retrieve information in bitcoin transactions using OP_RETURN☆11Aug 2, 2024Updated 2 years ago
- libmaus☆12Apr 16, 2015Updated 11 years ago
- CWL tools and workflows for GGR☆22Oct 12, 2021Updated 5 years ago
- Docker image for Warp speed Data Transfer (WDT)☆10Dec 19, 2016Updated 9 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Website and slides for intro to bioinformatics class at Fred Hutch☆13Jun 4, 2018Updated 8 years ago
- Snakemake Tutorial for NGSSchool.☆10Aug 31, 2020Updated 6 years ago
- A simple calendar program in D, to demonstrate its component-programming features☆13Mar 11, 2022Updated 4 years ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 9 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆13Oct 30, 2024Updated 2 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- A template repository for snakemake workflows.☆43Mar 16, 2026Updated 7 months ago