Infinidat / slimfastqLinks
Fast, efficient, lossless compression of fastq files
☆14Updated 4 years ago
Alternatives and similar repositories for slimfastq
Users that are interested in slimfastq are comparing it to the libraries listed below
Sorting:
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- ☆17Updated this week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Basic UPD caller☆12Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- A configurable de novo assembly pipeline☆28Updated 9 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- ☆17Updated 6 years ago
- sort genomic data☆36Updated 5 years ago
- ☆16Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago