Infinidat / slimfastqLinks
Fast, efficient, lossless compression of fastq files
☆14Updated 5 years ago
Alternatives and similar repositories for slimfastq
Users that are interested in slimfastq are comparing it to the libraries listed below
Sorting:
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated this week
- ☆16Updated 9 years ago
- Basic UPD caller☆12Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- ☆19Updated this week
- ☆29Updated 4 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Updated 7 months ago
- An awk-like VCF parser☆56Updated 2 years ago
- ☆28Updated 8 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago