HCA-integration / scAtlasTbLinks
Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
☆45Updated this week
Alternatives and similar repositories for scAtlasTb
Users that are interested in scAtlasTb are comparing it to the libraries listed below
Sorting:
- ☆34Updated 9 months ago
- ☆37Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- ☆44Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated this week
- .h5mu files interface for Seurat☆32Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ☆29Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Updated 3 years ago
- Interactive visualisation of CellphoneDB results☆11Updated 10 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆43Updated last month
- ☆26Updated 6 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Clone identification from single-cell data☆61Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated this week
- ☆43Updated 4 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆89Updated this week
- ☆12Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 8 months ago