Alternatives and similar repositories for consonance:

Users that are interested in consonance are comparing it to the libraries listed below

• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 3 weeks ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 9 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 4 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 6 years ago
• VertebrateResequencing / vr-pipe
  Generic pipeline system
  ☆23Updated 6 years ago
• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 5 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago
• cancerit / cgpPindel
  Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
  ☆28Updated 6 months ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• wtsi-npg / illumina2bam
  Generate and process BAM files from Illumina sequencing instrument files
  ☆23Updated 9 years ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆28Updated last week
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆12Updated 4 years ago
• ga4gh / wiki
  a place for GA4GH-related wiki pages
  ☆16Updated 7 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 4 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆61Updated 6 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• DCGenomics / DangerTrack
  ☆13Updated 7 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆43Updated 6 years ago
• sapporo-wes / sapporo-service
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆22Updated 2 months ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆30Updated 2 weeks ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆40Updated 3 weeks ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago