Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
☆14Jun 27, 2018Updated 7 years ago
Alternatives and similar repositories for consonance
Users that are interested in consonance are comparing it to the libraries listed below
Sorting:
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 3 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 8 years ago
- Reference-based compression of SRA data☆37Mar 26, 2013Updated 12 years ago
- Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge☆15Dec 10, 2015Updated 10 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- SEQSpark documentation☆18Nov 17, 2020Updated 5 years ago
- [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute☆18Sep 29, 2023Updated 2 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 9 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Common Lisp implementation of RFC 4122 -- not unlike UUID☆19Oct 6, 2021Updated 4 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆13Updated this week
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 2, 2025Updated last year
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- company backend for plsense☆14Jan 18, 2018Updated 8 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Dec 29, 2018Updated 7 years ago
- Structural Variant Index☆75Dec 13, 2024Updated last year
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆68Jul 26, 2017Updated 8 years ago
- ☆11Sep 5, 2018Updated 7 years ago
- Generic pipeline system☆23Jul 20, 2018Updated 7 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- A 3D barplot script for R. Can encode variables using both height and depth of columns.☆10Oct 7, 2019Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago