Alternatives and similar repositories for variancePartition:

Users that are interested in variancePartition are comparing it to the libraries listed below

• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆56Updated 2 months ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated 9 months ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 3 weeks ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆21Updated 4 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆70Updated last week
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 7 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆105Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆81Updated last month
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆57Updated 4 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated 8 months ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆54Updated 2 weeks ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 months ago
• MangiolaLaboratory / sccomp
  Testing differences in cell type proportions from single-cell data.
  ☆95Updated this week
• markrobinsonuzh / cytofWorkflow
  ☆15Updated 9 months ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 3 months ago
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 8 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆45Updated 2 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 4 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆44Updated last year
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated 6 months ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆53Updated last year
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆42Updated 2 months ago
• YosefLab / scone
  ☆53Updated 3 months ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆36Updated last year
• ThomasCarroll / ATAC_Workshop
  ATAC_seq Workshop
  ☆14Updated 6 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 3 years ago