Quantify and interpret divers of variation in multilevel gene expression experiments
☆83Jul 22, 2026Updated this week
Alternatives and similar repositories for variancePartition
Users that are interested in variancePartition are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simulation and data analysis code for dream paper☆13Jun 5, 2020Updated 6 years ago
- Analysis code and results for dreamlet☆11Apr 16, 2026Updated 3 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34Jul 2, 2026Updated 3 weeks ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆16Jul 14, 2026Updated last week
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Code for the paper on t-SNE with variable degree of freedom☆11Jun 27, 2019Updated 7 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Mar 20, 2026Updated 4 months ago
- DEqMS is a tool for quantitative proteomic analysis☆29Apr 16, 2025Updated last year
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆37May 27, 2025Updated last year
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆49Apr 17, 2026Updated 3 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆50Sep 18, 2025Updated 10 months ago
- Gene set variation analysis☆247Updated this week
- An R package for multivariate adaptive shrinkage.☆99Nov 7, 2024Updated last year
- ☆61Jul 12, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Multiple trajectory alignment of time-series data☆14Oct 14, 2023Updated 2 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- R package for testing and visualizing gene list overlaps☆20Aug 22, 2016Updated 9 years ago
- Combination matrix axis for 'ggplot2' to create 'UpSet' plots☆398Jan 23, 2026Updated 6 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Jul 12, 2026Updated last week
- Tejaas - a tool for discovering trans-eQTLs☆12Oct 14, 2022Updated 3 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- ☆37Jan 9, 2024Updated 2 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Fast Gene Set Enrichment Analysis☆452Jun 27, 2026Updated 3 weeks ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆50Oct 13, 2025Updated 9 months ago