Simon-Coetzee / motifBreakRLinks
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
☆31Updated last year
Alternatives and similar repositories for motifBreakR
Users that are interested in motifBreakR are comparing it to the libraries listed below
Sorting:
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Create QC and summary reports for Alevin output☆31Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- ☆23Updated 9 months ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆41Updated 3 years ago