Simon-Coetzee / motifBreakRLinks
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
☆31Updated last year
Alternatives and similar repositories for motifBreakR
Users that are interested in motifBreakR are comparing it to the libraries listed below
Sorting:
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- DriverPower☆26Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- Create QC and summary reports for Alevin output☆31Updated last month
- Transcript quantification import with automatic metadata detection☆67Updated last week
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- ☆42Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago