Count ratio uncertainty modeling base linear regression
☆15Sep 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for crumblr
Users that are interested in crumblr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆37Sep 23, 2026Updated 3 weeks ago
- SPatial Omics Oxford Analysis Pipeline☆12Jul 26, 2024Updated 2 years ago
- NMF and complete deconvolution algorithm☆10Sep 21, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- ☆20Sep 24, 2026Updated 3 weeks ago
- Single Cell multimodal data scripts for downloading datasets☆20May 20, 2026Updated 5 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 3 years ago
- cgat-flow repository☆16May 10, 2026Updated 5 months ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆31May 4, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆30Oct 11, 2025Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- ☆10Mar 12, 2023Updated 3 years ago
- An R package designed to demultiplex cell hashing data☆32Oct 10, 2026Updated last week
- SANTO: a coarse-to-fine stitching and alignment method for spatial omics☆16Jun 27, 2024Updated 2 years ago
- MASC: Mixed-effects Association testing for Single Cells☆16Apr 16, 2021Updated 5 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 4 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Jul 23, 2026Updated 2 months ago
- B-cell Hybrid Immune Variant Engine☆12Updated this week
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 3 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆32Jul 8, 2025Updated last year
- A public MuSpAn page for community discussions and issue reporting.☆26Sep 2, 2026Updated last month
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆52Jan 8, 2025Updated last year
- ☆13Aug 9, 2022Updated 4 years ago
- Documentation for the ISB-CGC on Read the Docs.☆11Updated this week
- Methods to discover gene programs on single-cell data☆211Oct 12, 2026Updated last week
- Quantify and interpret divers of variation in multilevel gene expression experiments☆17Sep 23, 2026Updated 3 weeks ago
- LLM-powered dataset curation for NCBI GEO — search, screen, annotate, and export with any OpenAI-compatible model☆21Sep 14, 2026Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Sep 24, 2026Updated 3 weeks ago