zhangyuqing / ComBat-seqLinks
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
☆201Updated 5 years ago
Alternatives and similar repositories for ComBat-seq
Users that are interested in ComBat-seq are comparing it to the libraries listed below
Sorting:
- Cell types enrichment analysis☆206Updated last year
- my notes for scATACseq analysis☆133Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated 2 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated this week
- ☆101Updated 4 months ago
- ☆118Updated 7 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆300Updated 2 years ago
- ☆202Updated last month
- ☆144Updated 7 years ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated last month
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆196Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆99Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆119Updated 6 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Updated last year
- Analysis pipeline for ATAC-seq data☆84Updated 2 years ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆118Updated 5 years ago
- Single cell RNA sequencing analysis course☆236Updated 3 weeks ago
- Interactively analyze single cell genomic data☆184Updated 3 weeks ago
- R package to access DoRothEA's regulons☆154Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- ☆145Updated 7 years ago
- Shiny Interactive Web Apps for Single-Cell Data☆203Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆181Updated last week