zhangyuqing / ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
☆174Updated 4 years ago
Alternatives and similar repositories for ComBat-seq:
Users that are interested in ComBat-seq are comparing it to the libraries listed below
- Cell types enrichment analysis☆194Updated 9 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- my notes for scATACseq analysis☆122Updated 11 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆270Updated 5 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆142Updated this week
- ☆88Updated last month
- ☆59Updated 10 months ago
- Clone of the Bioconductor repository for the SingleR package.☆185Updated last month
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated 2 months ago
- ☆257Updated 4 months ago
- ☆118Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Introduction to bulk RNA-seq☆104Updated last month
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago
- R package to access DoRothEA's regulons☆143Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- ☆90Updated 4 years ago
- Single cell RNA sequencing analysis course☆205Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆278Updated 2 years ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 4 months ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆216Updated last week