lpantano / DEGreportLinks
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
☆27Updated 3 months ago
Alternatives and similar repositories for DEGreport
Users that are interested in DEGreport are comparing it to the libraries listed below
Sorting:
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Differential expression and allelic analysis, nonparametric statistics☆30Updated last year
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- Create QC and summary reports for Alevin output☆31Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 2 months ago
- ☆28Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 2 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated last month
- An R for fast and flexible DNA methylation analysis☆35Updated last month
- R package wrapping bedtools☆44Updated 10 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated 2 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 8 months ago
- Glimma R package☆50Updated last year
- HOT regions paper☆11Updated 6 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Calculate and plot distributions of genomic ranges☆27Updated 9 months ago