HuaZou / bioinformatics_pipeline
Bioinformatics Pipeline
☆13Updated 2 years ago
Alternatives and similar repositories for bioinformatics_pipeline:
Users that are interested in bioinformatics_pipeline are comparing it to the libraries listed below
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆12Updated last year
- omics data analysis using clusterProfiler ;)☆13Updated 11 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆12Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- ☆14Updated 3 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆19Updated 6 years ago
- ☆10Updated this week
- RNA-seq analysis scripts☆15Updated last week
- ☆11Updated 5 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 5 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- Data visualization with R☆10Updated 4 years ago
- ☆17Updated 9 months ago
- Readme☆10Updated 5 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Updated 4 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated last year
- ☆19Updated 11 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆18Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- Query the gene models of a given organism/assembly☆27Updated 3 weeks ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆12Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago