Famingzhao / NEPALLinks
Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
☆14Updated 10 months ago
Alternatives and similar repositories for NEPAL
Users that are interested in NEPAL are comparing it to the libraries listed below
Sorting:
- ☆22Updated 2 years ago
- ☆16Updated last year
- ☆37Updated 3 years ago
- ☆58Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Updated last year
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆18Updated last year
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 4 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆24Updated 3 years ago
- ☆12Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 7 months ago
- ☆17Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆21Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- ☆16Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆33Updated 10 months ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 5 months ago
- ☆50Updated 5 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- ☆26Updated 3 years ago
- ☆22Updated 2 years ago
- BulkSignalR☆24Updated 2 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- Hierarchical Cell Annotation☆26Updated 10 months ago