Alternatives and similar repositories for NEPAL

Users that are interested in NEPAL are comparing it to the libraries listed below

• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• Famingzhao / NEPAL_RawCode
  NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…
  ☆12Updated last year
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 8 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 3 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆22Updated 2 years ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• pritykinlab / ulipstic-analysis
  ☆9Updated 10 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆20Updated 6 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 2 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• ventolab / Human-Endometrial-Cell-Atlas_HECA
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 11 months ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• jinworks / scAB
  scAB detects multiresolution cell states with clinical significance
  ☆17Updated 2 years ago
• Coolgenome / GastricCancer
  ☆11Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆21Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• miccec / yaGST
  ☆13Updated 7 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• guangchunhan / LUAD_Code
  ☆18Updated last year
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆17Updated 10 months ago
• ruipwang / GastricTME
  ☆15Updated last year
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 6 months ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated 11 months ago