Source code for the crAssphage project
☆51Nov 11, 2025Updated 5 months ago
Alternatives and similar repositories for crAssphage_project
Users that are interested in crAssphage_project are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆72Mar 16, 2025Updated last year
- Sequencing and analysis of crAssphage regions from around the globe☆18Apr 7, 2020Updated 6 years ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- rdacca.hp: an R package for hierarchical and variation partitioning in multiple regression and canonical analysis☆22Feb 22, 2025Updated last year
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- ☆10Jul 8, 2020Updated 5 years ago
- ☆18Jun 25, 2025Updated 9 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- ☆58Dec 30, 2020Updated 5 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Jun 4, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆43Nov 20, 2017Updated 8 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆34Oct 17, 2023Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- ☆12Apr 3, 2025Updated last year
- R and python scripts for correlation-based network analysis☆62May 17, 2020Updated 5 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 9 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- ☆94Aug 20, 2019Updated 6 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- ☆30Sep 21, 2023Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Apr 12, 2026Updated last week
- ARGpore2☆13Sep 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24May 3, 2019Updated 6 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated 2 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆20Oct 17, 2025Updated 6 months ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 11 years ago