karkman / crAssphage_projectLinks
Source code for the crAssphage project
☆50Updated last month
Alternatives and similar repositories for crAssphage_project
Users that are interested in crAssphage_project are comparing it to the libraries listed below
Sorting:
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆44Updated 5 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 6 months ago
- ☆46Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 3 years ago
- ☆58Updated last year
- ☆13Updated last year
- Microbiome Protocol eBook related documents and scripts.☆49Updated 4 years ago
- iMeta teaches you to plot☆54Updated 2 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month
- Scripts for stat and plot figures in rice microbiome paper☆20Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- A simple plot library☆52Updated 8 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- ☆32Updated 2 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- ☆28Updated last year
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- R implementation of the LEfSe method☆63Updated last month
- A catalogue of available long read sequencing data analysis tools☆83Updated 3 months ago
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago