karkman / crAssphage_projectView external linksLinks
Source code for the crAssphage project
☆50Nov 11, 2025Updated 3 months ago
Alternatives and similar repositories for crAssphage_project
Users that are interested in crAssphage_project are comparing it to the libraries listed below
Sorting:
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Jun 24, 2021Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Mar 16, 2025Updated 10 months ago
- ☆10Jul 8, 2020Updated 5 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Galaxy Wrappers and helpers for the MISA ttols☆11Oct 11, 2014Updated 11 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Jun 4, 2025Updated 8 months ago
- ☆17Jun 25, 2025Updated 7 months ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 5 years ago
- Sequencing and analysis of crAssphage regions from around the globe☆18Apr 7, 2020Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- MetaCompare☆19Mar 3, 2024Updated last year
- ☆42Nov 20, 2017Updated 8 years ago
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 9 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Jan 27, 2026Updated 2 weeks ago
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- 课题组每周研讨会☆205Apr 17, 2024Updated last year
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- ☆95Aug 20, 2019Updated 6 years ago
- rdacca.hp: an R package for hierarchical and variation partitioning in multiple regression and canonical analysis☆22Feb 22, 2025Updated 11 months ago
- QIIME 2 plugin wrapping DADA2☆22Jan 27, 2026Updated 2 weeks ago
- R and python scripts for correlation-based network analysis☆62May 17, 2020Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 8 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24May 3, 2019Updated 6 years ago
- ☆26Sep 23, 2025Updated 4 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- Causal mediation analysis in R☆31Dec 12, 2020Updated 5 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Mar 29, 2019Updated 6 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 3 years ago
- my first book, Biological information analysis of cancer tumors☆26Mar 8, 2022Updated 3 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆33Oct 17, 2023Updated 2 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Jul 26, 2022Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Jan 7, 2026Updated last month