Source code for the crAssphage project
☆51Nov 11, 2025Updated 6 months ago
Alternatives and similar repositories for crAssphage_project
Users that are interested in crAssphage_project are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Mar 16, 2025Updated last year
- Sequencing and analysis of crAssphage regions from around the globe☆18Apr 7, 2020Updated 6 years ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- rdacca.hp: an R package for hierarchical and variation partitioning in multiple regression and canonical analysis☆23Feb 22, 2025Updated last year
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆17Sep 10, 2024Updated last year
- ☆10Jul 8, 2020Updated 5 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- ☆60Dec 30, 2020Updated 5 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Jun 4, 2025Updated 11 months ago
- ☆43Nov 20, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆35Oct 17, 2023Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- ☆14Apr 3, 2025Updated last year
- R and python scripts for correlation-based network analysis☆61May 17, 2020Updated 6 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 10 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 6 months ago
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- ☆94Aug 20, 2019Updated 6 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- ☆32Sep 21, 2023Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆471Jul 28, 2023Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40May 20, 2026Updated last week
- ARGpore2☆13Sep 12, 2024Updated last year
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24May 3, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated last week
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆20Oct 17, 2025Updated 7 months ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago