Higher level repo for aggregating all of Atlas workflow logic for Single Cell
☆14Mar 3, 2026Updated this week
Alternatives and similar repositories for scxa-workflows
Users that are interested in scxa-workflows are comparing it to the libraries listed below
Sorting:
- Code related to scRNA analysis using the scAmpi workflow☆27Jan 21, 2026Updated last month
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Dec 1, 2024Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 10 months ago
- ☆16Sep 13, 2024Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆49Feb 9, 2024Updated 2 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Jul 22, 2025Updated 7 months ago
- ☆20Jan 9, 2024Updated 2 years ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated last year
- ☆50Jan 16, 2020Updated 6 years ago
- ☆21Dec 23, 2024Updated last year
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Jul 15, 2022Updated 3 years ago
- ☆22Sep 20, 2022Updated 3 years ago
- Updated and optimized fork of BSMAP☆23Dec 28, 2020Updated 5 years ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Updated this week
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Oct 31, 2025Updated 4 months ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Apr 13, 2025Updated 10 months ago
- ☆10May 24, 2025Updated 9 months ago
- ☆14Jul 1, 2025Updated 8 months ago
- ☆128Mar 27, 2022Updated 3 years ago
- ☆32Jan 22, 2021Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 4 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 10 months ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆35Dec 9, 2025Updated 2 months ago
- Scripts for using scanpy☆39Oct 20, 2025Updated 4 months ago
- ☆43Oct 20, 2023Updated 2 years ago
- IPSS-M study☆13Apr 3, 2023Updated 2 years ago
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 7 years ago
- ☆14Oct 14, 2022Updated 3 years ago
- Open Image Discovery: A platform for Image Life Cycle Management☆11Aug 25, 2017Updated 8 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year