Higher level repo for aggregating all of Atlas workflow logic for Single Cell
☆14Jul 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for scxa-workflows
Users that are interested in scxa-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code related to scRNA analysis using the scAmpi workflow☆28Jun 24, 2026Updated last month
- ☆20Jan 9, 2024Updated 2 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- ☆17Sep 13, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 17, 2026Updated last week
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 2 months ago
- Tensor Switching Networks☆12Nov 2, 2017Updated 8 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- Open-source software pipeline for cancer classification from high-throughput data using machine learning.☆19Feb 19, 2019Updated 7 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Mar 26, 2026Updated 3 months ago
- ☆17Mar 12, 2021Updated 5 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆50Feb 9, 2024Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 9 months ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- The SnoVault general purpose hybrid object-relational database☆16Mar 7, 2024Updated 2 years ago
- ☆51Jan 16, 2020Updated 6 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆22Dec 1, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Sep 11, 2025Updated 10 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Mar 20, 2026Updated 4 months ago
- ☆10May 24, 2025Updated last year
- An R for fast and flexible DNA methylation analysis☆36Updated this week
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- ☆13Jul 1, 2021Updated 5 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- ☆23Sep 20, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Atac-seq QC matrix☆22Jun 4, 2024Updated 2 years ago
- IPSS-M study☆13Apr 3, 2023Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 9 months ago
- ☆10Jul 8, 2020Updated 6 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- A Python FASTA file Parser and Writer.☆17Sep 3, 2022Updated 3 years ago