Higher level repo for aggregating all of Atlas workflow logic for Single Cell
☆14Jul 9, 2026Updated 3 months ago
Alternatives and similar repositories for scxa-workflows
Users that are interested in scxa-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Code related to scRNA analysis using the scAmpi workflow☆26Jun 24, 2026Updated 4 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Jan 9, 2024Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 months ago
- ☆17Sep 13, 2024Updated 2 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- Tensor Switching Networks☆12Nov 2, 2017Updated 9 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆17Mar 11, 2021Updated 5 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆30Mar 26, 2026Updated 7 months ago
- ☆18Mar 12, 2021Updated 5 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Spatially-aware quality control for spatial transcriptomics☆17Oct 16, 2026Updated 2 weeks ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆51Feb 9, 2024Updated 2 years ago
- ☆23Dec 23, 2024Updated last year
- The SnoVault general purpose hybrid object-relational database☆16Mar 7, 2024Updated 2 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- FastCAR is an R package for Fast Correction of Ambient RNA in droplet based single cell sequencing data☆12Oct 14, 2026Updated 2 weeks ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆23Dec 1, 2024Updated last year
- ☆11Sep 11, 2025Updated last year
- ☆13Jul 1, 2021Updated 5 years ago
- ☆54Jan 16, 2020Updated 6 years ago
- ☆11May 24, 2025Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Oct 14, 2026Updated 2 weeks ago
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 5 years ago
- An R for fast and flexible DNA methylation analysis☆36Jul 21, 2026Updated 3 months ago
- protein domain-level embedding via DCT for similarity search☆10Oct 3, 2024Updated 2 years ago
- Visualization of scRNA-seq data.☆98Nov 10, 2022Updated 3 years ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- ☆10May 31, 2023Updated 3 years ago