estebanpw / chromeister
A dotplot generator for large chromosomes
☆42Updated last year
Alternatives and similar repositories for chromeister:
Users that are interested in chromeister are comparing it to the libraries listed below
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 3 weeks ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 2 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆36Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- ☆38Updated 2 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- orthology assignment using phylogenetic and network analyses☆46Updated last month
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆20Updated 3 years ago
- ☆28Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆29Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 2 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A program for assessing the T2T genome continuity☆71Updated last week
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago