estebanpw / chromeisterLinks
A dotplot generator for large chromosomes
☆42Updated last year
Alternatives and similar repositories for chromeister
Users that are interested in chromeister are comparing it to the libraries listed below
Sorting:
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- ☆28Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- ☆20Updated 3 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆37Updated 2 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated 7 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated this week
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- MIRA sequence assembler☆29Updated 5 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 4 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆50Updated 8 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago