A dotplot generator for large chromosomes
☆41Oct 3, 2023Updated 3 years ago
Alternatives and similar repositories for chromeister
Users that are interested in chromeister are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 6 months ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆14Mar 5, 2021Updated 5 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Updated this week
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- ☆27Jul 26, 2026Updated 3 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 3 months ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Chromosome conformation capture resolved near complete genome assembly of broomcorn millet☆11Sep 13, 2018Updated 8 years ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 8 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 10 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated 2 years ago
- ☆29Oct 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆26Apr 13, 2020Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 4 months ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Fully automated generation of UCSC assembly hubs☆34Oct 2, 2024Updated 2 years ago
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 4 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 3 weeks ago
- ☆53Jun 27, 2026Updated 4 months ago
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week