GIS-SP-Group / RCALinks
R package for robust clustering of single cell RNA sequencing data
☆39Updated 2 years ago
Alternatives and similar repositories for RCA
Users that are interested in RCA are comparing it to the libraries listed below
Sorting:
- ☆55Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆43Updated 8 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Updated 8 years ago
- ☆17Updated 6 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- R package of colors for the Buenrostro Lab☆86Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago