GIS-SP-Group / RCALinks
R package for robust clustering of single cell RNA sequencing data
☆40Updated 2 years ago
Alternatives and similar repositories for RCA
Users that are interested in RCA are comparing it to the libraries listed below
Sorting:
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆55Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 6 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆17Updated 6 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago
- ☆63Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆73Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆88Updated 4 years ago