GIS-SP-Group / RCALinks
R package for robust clustering of single cell RNA sequencing data
☆40Updated 2 years ago
Alternatives and similar repositories for RCA
Users that are interested in RCA are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the DropletUtils package.☆61Updated 2 weeks ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- ☆55Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 7 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- ☆17Updated 6 years ago
- simpler single cell RNAseq data clustering☆40Updated 6 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆25Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆43Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- ☆63Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago