cancerit / cgpPindelLinks
Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
☆28Updated 7 months ago
Alternatives and similar repositories for cgpPindel
Users that are interested in cgpPindel are comparing it to the libraries listed below
Sorting:
- SV clustering☆31Updated 4 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last year
- ☆35Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- DriverPower☆26Updated 11 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆39Updated 3 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- conda recipes for genomic data☆84Updated 4 years ago