bbbranjan / DUBStepRLinks
DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in single-cell RNA-sequencing data. This repository is no longer maintained - please refer to https://github.com/prabhakarlab/DUBStepR.
☆12Updated 4 years ago
Alternatives and similar repositories for DUBStepR
Users that are interested in DUBStepR are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- ☆60Updated last year
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆85Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Unified access to several second-generation deconvolution methods☆87Updated 2 weeks ago
- ☆62Updated 6 years ago
- ☆63Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆90Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆80Updated 10 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆27Updated 4 years ago
- ☆59Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 7 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated last year
- ☆17Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- ☆59Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago