Sequence analysis library used by Eddy/Rivas lab code
☆52Feb 16, 2026Updated 2 months ago
Alternatives and similar repositories for easel
Users that are interested in easel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HMMER: biological sequence analysis using profile HMMs☆408Feb 16, 2026Updated 2 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Apr 13, 2026Updated 2 weeks ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆129Apr 22, 2026Updated last week
- Learning and Aligning Large Protein Families with support of protein language models.☆31Updated this week
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- ☆10Dec 20, 2022Updated 3 years ago
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 2 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆26Jan 3, 2018Updated 8 years ago
- simple and not slow ORF caller☆23Apr 7, 2026Updated 3 weeks ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- ☆31Oct 26, 2021Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆68Jan 4, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Jul 28, 2019Updated 6 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Mar 20, 2026Updated last month
- ☆20Jul 16, 2021Updated 4 years ago
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- ORF prediction using python☆12Aug 24, 2021Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 9 months ago
- CDS prediction in transcripts☆24Mar 5, 2025Updated last year