EddyRivasLab / easelLinks
Sequence analysis library used by Eddy/Rivas lab code
☆48Updated last month
Alternatives and similar repositories for easel
Users that are interested in easel are comparing it to the libraries listed below
Sorting:
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- sensitive and precise assembly of short sequencing reads☆160Updated 10 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆73Updated 2 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated 2 weeks ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last week
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated this week
- Protein Alignment and Detection Interface☆61Updated last year
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated 2 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- ☆23Updated last year
- PaperBLAST: find papers about a protein or its homologs☆45Updated last week
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 5 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆33Updated 2 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆53Updated 11 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Logan Unitigs and Contigs☆145Updated 3 weeks ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 5 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 5 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- ☆31Updated 3 years ago