leylabmpi / endoR
Code and manual of the endoR R-package (Ruaud et al, in preparation).
☆12Updated last year
Alternatives and similar repositories for endoR:
Users that are interested in endoR are comparing it to the libraries listed below
- gutSMASH☆53Updated 2 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated last month
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- metabolic heatmap☆19Updated 5 years ago
- ☆29Updated this week
- ☆18Updated 4 years ago
- ☆32Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- ☆28Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated last week
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆11Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆29Updated last month
- Metagenomics-related extended functionalities to samtools☆20Updated last year
- A QIIME 2 plugin for interaction with the Greengenes2 database☆27Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆14Updated 2 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- ☆65Updated 2 months ago
- StrainFinder☆26Updated 6 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 2 months ago
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 5 months ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago