leylabmpi / endoRLinks
Code and manual of the endoR R-package (Ruaud et al, in preparation).
☆12Updated 2 years ago
Alternatives and similar repositories for endoR
Users that are interested in endoR are comparing it to the libraries listed below
Sorting:
- gutSMASH☆57Updated 3 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- metabolic heatmap☆22Updated 6 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- A package to annotate protein sequences☆60Updated 10 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated last week
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- ☆19Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Python bindings for the TaxonKit library☆42Updated this week
- ☆38Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- ☆31Updated 4 years ago
- ☆42Updated 7 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Updated 2 weeks ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated this week
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago