Alternatives and similar repositories for endoR:

Users that are interested in endoR are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆54Updated last month
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆22Updated 3 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆23Updated this week
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆30Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 9 months ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆19Updated 5 years ago
• Shenhav-and-Korem-labs / SCRuB
  ☆27Updated 3 weeks ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 2 years ago
• valdeanda / mebs
  Protocol for finding informative protein families and then using them to score omic samples
  ☆18Updated 2 years ago
• EBI-Metagenomics / mettannotator
  ☆62Updated last month
• YDaiLab / MiMeNet
  ☆19Updated 4 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆29Updated 3 weeks ago
• gamcil / clustermap.js
  ☆30Updated 3 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated this week
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆43Updated 2 months ago
• SegataLab / metamlst
  MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
  ☆13Updated last year
• cssmillie / StrainFinder
  StrainFinder
  ☆27Updated 6 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 3 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆27Updated 2 weeks ago
• mgtools / MinPath
  MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…
  ☆20Updated 3 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 3 months ago
• segalab / SGVFinder
  ☆32Updated last year
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆59Updated 2 years ago
• acvill / bracken_plot
  A Shiny app for taxonomic abundance visualization
  ☆7Updated 8 months ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆41Updated last week
• GCA-VH-lab / FlaGs
  ☆19Updated 2 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 5 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆30Updated last month