agmcfarland / GeneGrouper
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
☆17Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for GeneGrouper
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 11 months ago
- An R package designed for drawing gene arrow maps☆32Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Gene-flank analysis tool☆26Updated 6 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆50Updated last week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆18Updated 2 years ago
- Automatic Assembly For The Fungi☆19Updated last year
- ☆21Updated last year
- ☆19Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆59Updated 3 weeks ago
- Discover and annotate the virome☆31Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Strain Resolution ON Graphs☆47Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago