agmcfarland / GeneGrouperLinks
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
☆19Updated last year
Alternatives and similar repositories for GeneGrouper
Users that are interested in GeneGrouper are comparing it to the libraries listed below
Sorting:
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- ☆45Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- MAG Circularization Method☆32Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated last week
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- ☆22Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 9 months ago
- Gene-flank analysis tool☆34Updated last year
- Bacterial GWAS analysis☆46Updated 2 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Discover and annotate the virome☆56Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- ☆13Updated 8 years ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- ☆23Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last month
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago